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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGCTGGTCAAGCTTTGTTTGGGACTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGGgtattctttcacagatgtgccttaacatatgtattgcataataagaaccgacaaacaataatttattttttgcatttcatgccag

Basic information

species Vitis vinifera
transcript Vv08s0105g00590.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0105g00590.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA18G43310.1 (Glycine max), 5'ss of exon 10
-GTGGGCTGGTCAAGCTTTGTTTGGGACTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGGgtat------tctttcaca-gatgtgccttaacatatgtattgcataata-----agaaccgacaaacaataatttattttttgcatttcatgccag
 |||||||||||| ||||||||||| |||||||  || ||||||||||||||||| ||| | |||||||||||||| ||||      | ||   || ||  |    |   ||||| ||   ||||||     |  |   |     | |||| |  || ||  ||  |||  || 
GGTGGGCTGGTCAGGCTTTGTTTGGAACTCTTACACCAGATATAATTGTTCTCACACTCCTATACAGCATAGCTGGagtatgtaatatattcttcatgacattttgttggatatgaatatgataatatgtcaaataaaaatggttattaatgttgttgttaaatcacattgca-

upper sequence: Vv08s0105g00590.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G19390.1 (Glycine max), 5'ss of exon 2
GTGGGCTGGTCAAGCTTTGTTTGGGACTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGGgtat------tctttcaca-gatgtgccttaacatatgtattgcataata-----agaaccgacaaacaataatttattttttgcatttcatgccag
|||||| ||||| ||||||||||| |||||||  || ||||||||||||||||| ||| | |||||||||||||| ||||      | ||  ||| |        |   ||||| ||   ||||||     |  |   |     | |||| |  || ||| ||  |||  |||
GTGGGCGGGTCAGGCTTTGTTTGGAACTCTTACACCAGATATAATTGTTCTCACACTCCTATACAGCATAGCTGGAgtatgtaatatattctacatggcactttgttggatatgaatacgataatatgccaaataagaatggttattaatattgttgttgtatcacattgcag

upper sequence: Vv08s0105g00590.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA07G18470.1 (Glycine max), 5'ss of exon 10
GTGGGCTGGTCAAGCTTTGTTTGGGACTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGGgtat----tctttcaca-gatgtgccttaacatatgtattgcataat-----aagaaccgacaaacaataatttattttttgcatttcatgccag
|||||| ||||| ||||||||||| |||||||  || ||||||||||||||||| ||| | |||||||||||||| ||||    | ||  ||| |        |   ||||| ||   |||||     ||  |   |     | ||||    || ||| ||  |||  |||
GTGGGCAGGTCAGGCTTTGTTTGGAACTCTTACACCAGATATAATTGTTCTCACACTCCTATACAGCATAGCTGGAgtatgtaatattctacatggcactttgttggatatgaatatgataatatgccaaataagaatggttattaatactgttgttgtatcacattgcag

upper sequence: Vv08s0105g00590.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G51820.1 (Arabidopsis thaliana), 5'ss of exon 10
GTGGGCTGGTCAAGCTTTGTTTGGGACTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGGgtattctttcacagatgtgccttaacatatgtattgcataataagaaccgacaaacaataatttattttttgcatttcatgccag-----
||||||||| ||||| |||||||| |||||||  || ||| |  ||||||| || |||||||||||||||||||||||| |||||     |      |||   |   | || | | ||  |     | |  |  |   ||  | ||     ||  ||  |      
GTGGGCTGGCCAAGCATTGTTTGGCACTCTTACGCCAGATGTTGTTGTTCTAACACTCTTGTACAGCATAGCTGGGgtactcttttggcaa-accttttatgttgcttttttcgttatctgttgtaatatgctcttgcttcatgttgtacctttgtgataatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30252103|gb|CB968742.1|CB968742
EST:     CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGG                         CTGGGCATCGCCATTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCA
genomic: CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGGgtattctttc ... ttcatgccagCTGGGCATCGCCATTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCA
EST: gi|161705814|gb|FC057091.1|FC057091
EST:     CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGG                         CTGGGCATCGCCATTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCA
genomic: CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGGgtattctttc ... ttcatgccagCTGGGCATCGCCATTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCA
EST: gi|349830671|gb|FQ416969.1|FQ416969
EST:     CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGG                         CTGGGCATCGCCATTGTAAATGACTTTTAAAGTGTTGAAGGAGATAGAGCA
genomic: CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGGgtattctttc ... ttcatgccagCTGGGCATCGCCATTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCA
EST: gi|351033623|gb|FQ447782.1|FQ447782
EST:     CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGG                         CTGGGCCTCGCCATTGTAAATG
genomic: CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGGgtattctttc ... ttcatgccagCTGGGCATCGCCATTGTAAATG
EST: gi|351041270|gb|FQ447397.1|FQ447397
EST:     CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACCGCATAGCTGGG                         CTGGGCATCGCC
genomic: CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGGgtattctttc ... ttcatgccagCTGGGCATCGCC
EST: gi|351034199|gb|FQ463133.1|FQ463133
EST:     CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGG                         CTGGGCATCGCCATTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCA
genomic: CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGGgtattctttc ... ttcatgccagCTGGGCATCGCCATTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCA
EST: gi|351025946|gb|FQ427958.1|FQ427958
EST:     CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGG                         CTGGGCATCGCCATTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCA
genomic: CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGGgtattctttc ... ttcatgccagCTGGGCATCGCCATTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCA
EST: gi|351031189|gb|FQ445016.1|FQ445016
EST:     CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGG                         CTGGGCATCGCCATTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCA
genomic: CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGGgtattctttc ... ttcatgccagCTGGGCATCGCCATTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCA
EST: gi|349833147|gb|FQ416525.1|FQ416525
EST:     CTCTGAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGG                         CTGGGCATCTCCATTGTAAATGACTTTAAAAGT
genomic: CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGGgtattctttc ... ttcatgccagCTGGGCATCGCCATTGTAAATGACTTTAAAAGT
EST: gi|110698374|gb|EE075807.1|EE075807
EST:     CTCTTAATCCTGATATAATTGGTCCCACCCTCTTGTACAGCATAGCTGGG                         CTGGGCATCGCCATTGTAAATGACTTTAAAAG-GTTGAAAGAGATAGA
genomic: CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGGgtattctttc ... ttcatgccagCTGGGCATCGCCATTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGA
EST: gi|351018561|gb|FQ424668.1|FQ424668
EST:     CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGG                         CTGGGCATCGCCATTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCA
genomic: CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGGgtattctttc ... ttcatgccagCTGGGCATCGCCATTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCA
EST: gi|349829107|gb|FQ419639.1|FQ419639
EST:     CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGG                         CTGGGCATCGCCATTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCA
genomic: CTCTTAATCCTGATATAATTGTTCTCACCCTCTTGTACAGCATAGCTGGGgtattctttc ... ttcatgccagCTGGGCATCGCCATTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCA