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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGAGGTTCAATTCCACTCCTCTGGGAGCAAATTGTTGATTTGAGCTACAAGCCACGACTTAGAATCATCAATCATGAGCAAACTgtatgcttttattccaagatgtagttttctatggtttgagtttgagttgcacaatttgagcatctattaatgtttgtgtttggtcctctgtattcag

Basic information

species Vitis vinifera
transcript Vv08s0105g00480.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0105g00480.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os03g18080.2 (Oryza sativa), 5'ss of exon 10
GTTCGAGGTTCAATTCCACTCCTCTGGGAGCAAATTGTTGATTTGAGCTACAAGCCACGACTTAGAATCATCAATCATGAGCAAACTgtatgcttttattccaagatgtagttttctatggtttgagtttgagttgcacaatttgagcatctattaatgtttgtgtttggtcctctgtattcag
|||||||| || |||||||| |||||||||||||| || ||||| |||||||| ||| | || |  || ||  | |||||| |||| ||| |  |||| | |    | ||||||  ||    || | |     || ||||   |||  |||| |  || | |        |   |||  | |||
GTTCGAGGCTCCATTCCACTTCTCTGGGAGCAAATAGTGGATTTAAGCTACAAACCATGTCTCAACATAATTGAACATGAGGAAACGgtaggaatttactgcct--tttagtttgatacctcttaaatg-acctttcaca--ctgattatctgtagatctcttacaaacttgtactgcttacag

upper sequence: Vv08s0105g00480.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G047894_T03 (Zea mays), 5'ss of exon 9
GTTCGAGGTTCAATTCCACTCCTCTGGGAGCAAATTGTTGATTTGAGCTACAAGCCACGACTTAGAATCATCAATCATGAGCAAACTgtatgcttttattccaagatgtagttttctatggtttgagtttgagttgcacaatttgagcatctattaatgtttgtgtttggtcctctgtattcag
 ||||||||||||||||||| |||||||||||||| || ||||| |||||||| ||||| ||||| || ||  | |||||  |||||||| |  ||| || ||   | |     || ||  ||  | | |    || |  | ||     |||   | || ||   |   |              
CTTCGAGGTTCAATTCCACTTCTCTGGGAGCAAATAGTGGATTTAAGCTACAAACCACGGCTTAGCATTATTGAACATGAAGAAACTgtaagaatttgttaca---ttttacgctccatactt--aatatagcctg-atgacttc----tcttaaactgattccatacag--------------

upper sequence: Vv08s0105g00480.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G51830.1 (Arabidopsis thaliana), 5'ss of exon 10
GTTCGAGGTTCAATTCCACTCCTCTGGGAGCAAATTGTTGATTTGAGCTACAAGCCACGACTTAGAATCATCAATCATGAGCAAACTgtatgcttttattccaagatgtagttttctatggtttgagtttgagttgcacaatttgagcatctattaatgtttgtgtttggtcctctgtattcag
|||||||||||||| ||||| || |||||||| || ||||||||||| || |||||||| ||||  || |  || |||||  | || |||   ||||||     ||| |   | |   | | || | | |  | ||  ||           || ||| | |    ||  | |  | |       
GTTCGAGGTTCAATCCCACTTCTTTGGGAGCAGATCGTTGATTTGAGTTATAAGCCACGGCTTAAGATAAATAAGCATGAAGAGACGgtacctttttat-----gattt---tcttactagattaattatatgatgtccagcactcaatcttaataa-gctaaatttctgcctccag-------