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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGAATGATCCAACAGAATGTTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacctttcaattttattttatttttccccttcaaagcccagtaattccagttgctgagatattttggttgtgtttcag

Basic information

species Vitis vinifera
transcript Vv08s0105g00230.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0105g00230.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os11g06020.1 (Oryza sativa), 5'ss of exon 3
TGGGAATGATCCAACAGAATGTTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagc------acctttcaattttattttatttttccccttcaaagcccagtaattccagttgctgagatattttggttgtgtttcag------------
|||| ||||| ||    |  |  ||| | |||||| | ||  | || ||  | || || ||  | || || ||||||||||| |||||||||||||||||||| |       |  | || ||  |  || ||   || | | |    |||     |||   ||  | ||   ||||  |||  | |||             
TGGGCATGATGCAGAGCAGCGCGTGGCGCCCCCAGCGCGGCCTCCCCGAGCGCTCCGTCTCCATCCTCCGGGCTTGGCTCTTCGAACACTTCCTCCACCCgtatgtccatatatttatccatcattcttcatccatctcttccggctccctccgtttcatatta-taagtcgttttcattgcatctcatccatcattcttc

upper sequence: Vv08s0105g00230.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os12g06340.2 (Oryza sativa), 5'ss of exon 3
TGGGAATGATCCAACAG-AATGTTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacctttcaattttattttatttttccccttcaaagcccagtaattccagttgctgagatattttggttgtgtttcag-----------------
  ||   |  ||  | |    |  ||| | || ||| | ||  | || ||  |  | || || || || |||||||||||||| || || |||||||||||||||| |        ||  ||||||   ||    ||   ||   | |  |     ||  |   || ||    || |    ||                  
-CGGTGGGCGCCGCCGGCGGCGGGTGGCGGCCGCAGCGTGGCCTCCCCGAGCGCGCCGTCTCCGTCCTCCGCGCTTGGCTCTTCGAGCATTTCCTCCACCCgtaagtaatcaaattttgaattttaaaatttaaatttgtagttgatttttggggttttttcttattttccttttttaaaacaagccttagtttttaagcc

upper sequence: Vv08s0105g00230.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA03G36070.1 (Glycine max), 5'ss of exon 4
TGGGAATGATCCAACAGAATGTTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcac-ctttcaatttta----ttttatttttccccttcaaagcccagtaattccagttgctgagatattttggttgtgtttcag-------------------------------------------------------------------
||||||||||||| || |||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| || || ||    || | | |||    || |    |  |||| |  | ||   || | | |||       ||| |                                                                    
TGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCACCCgtaagcacacttacatttataaaagttctctctttttattttattctcttgtaagt--aattatggaaaaagttta-caacattttaaatgtttactgttaatttaattcaaagataatacatgttgtgctgaaataactttgtttggatttcag

upper sequence: Vv08s0105g00230.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA19G38690.1 (Glycine max), 5'ss of exon 6
TGGGAATGATCCAACAGAATGTTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacctttcaatt------------------ttattttatttttcccc-ttcaaagcccagtaattccagtt---gctgagatattttggttgtgtttcag
||||||||||||| || |||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||  || | ||                  || ||  |||||| |   || | |    ||| || | | ||     | | || |||| ||| | |     
TGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCATCCgtaagcacacttaacttacttaaatgtaatatacattcttccattttttctaatttataatttagtcatcctattttaaaataaaattttttagttctct-----

upper sequence: Vv08s0105g00230.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA02G35450.3 (Glycine max), 5'ss of exon 3
TGGGAATGATCCAACAGAATGTTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacctttcaattttattttatttttccccttcaaagcccagtaattccagttgctgagatattttggttgtg-----tttcag
||||||||||| | || |||| ||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||||||||||| ||     || | |  ||| ||||     ||   |         |||    || ||| ||   |||  | ||     ||||||
TGGGAATGATCAATCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAGAGATCGGTTTCTGTTCTGCGTGCTTGGCTCTTTGAACACTTTCTCCACCCgtaaggacacccaaaatctcattttttttaatattttgtaagttgaaggttctttgtgttgaaatgacttgagtttggtttttttcag

upper sequence: Vv08s0105g00230.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G10040.1 (Glycine max), 5'ss of exon 4
TGGGAATGATCCAACAGAATGTTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcac-ctttcaattttattttattt------ttccccttcaaagcccagtaattccagttgctgagat-attttggttgtgtttcag---------
||||||||||||| || |||| |||||||||||||||||||||||| || ||||| ||||||||||| || |||||||||||||||||||| || || ||||||| |  |    ||| | || || |||      ||    ||   |         |||    || ||| || | ||  |||  ||||  |         
TGGGAATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTTCTGCGTGCTTGGCTCTTTGAACACTTTCTTCATCCgtaaggatacccaaaatctcatcttttttggaaattttgattttgtaatttgaaggttctttgtgttgaaatgacttgagtttggttttggttttttcag

upper sequence: Vv08s0105g00230.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ06042 (Selaginella moellendorffii), 5'ss of exon 2
TGGGAATGATCCAACAGAATGTTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct-ttcaattttattttatttttccccttcaaagcccagtaattccagt--tgctgagatattt--tggttgtgtttcag------------
| || ||| || | ||| | |  ||||| || ||| ||||| | || ||  |||| |||||  |  | || |||||||||||||| ||||||||||| |||||||    | ||    |||   |  |  |      |   |||   | |  |   ||  ||||    |  |   ||  || ||    |            
TCGGGATGCTCAACCAGCACGCCTGGAGGCCGCAGCGAGGACTCCCCGAGCGATCGGTTTCGATCTTGCGAGCTTGGCTCTTTGAGCACTTCCTCCATCCgtaagtttttgtttggcttttgctcttcctcgaaagttggagcttggaatgtttggtgctgcttgattggtccctgactgagtgattgctagatttgcgg

upper sequence: Vv08s0105g00230.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ30193 (Selaginella moellendorffii), 5'ss of exon 2
TGGGAATGATCCAACAGAATGTTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacctttcaattttattttatttttccccttcaaagcccagtaattccagt--tgctgagatattt--tggttgtgtttcag-------------
| || ||| || | ||| | |  ||||| || ||| ||||| | || ||  |||| |||||  |  | || |||||||||||||| ||||||||||| |||||||     ||    ||| | |  |  |      |   |||   | |  |   ||  |||||   |  |   ||  || ||    |             
TCGGGATGCTCAACCAGCACGCCTGGAGGCCGCAGCGAGGACTCCCCGAGCGATCGGTTTCGATCTTGCGAGCTTGGCTCTTTGAGCACTTCCTCCATCCgtaagttttgtttggctttttctcttcctcgaaagttggagcttggaatgtttggtgctgctggattggtccctgactgggtgattgcttgatttgcggg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714978|gb|FC063948.1|FC063948
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
EST: gi|38516686|gb|CF983861.1|CF983861
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGNCTCA
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGG-CTCA
EST: gi|161716829|gb|FC068101.1|FC068101
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
EST: gi|29786121|gb|CB343619.2|CB343619
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
EST: gi|110728156|gb|EE103480.1|EE103480
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
EST: gi|71861288|gb|DT010343.1|DT010343
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCAAAGGATTCAGACAAGC
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGC
EST: gi|110712074|gb|EE089283.1|EE089283
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
EST: gi|351056024|gb|FQ453485.1|FQ453485
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGTCTCAC
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
EST: gi|161720884|gb|FC069618.1|FC069618
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC