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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCATGGCTCAGAGCATGACTGCTCGCCCAATGAAGGGAATGCTTACTGGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaaaactcataaaaagcggcttaagaaagatgtatatctctctgaaactaataatagtttgcatgatttatatggcttcttttcag

Basic information

species Vitis vinifera
transcript Vv08s0056g01570.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0056g01570.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ05611 (Selaginella moellendorffii), 5'ss of exon 9
CCACCATGGCTCAGAGCATGACTGCTCGCCCAATGAAGGGAATGCTTACTGGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgta----ttaagaaaactcataaaaagcggcttaagaaagatgtatatctctctgaaactaataatagtttgcatgatttatatggcttcttttcag
|  ||    | |||||| | |||    | || |||||||||||||| || || || || || ||| ||||||||||||||||  ||||||||||||| ||||     ||       |||||  | | |      |    |   ||  | ||  | |    |                                    
CTTCCTACTCGCAGAGCCTCACTAAGAGGCCCATGAAGGGAATGCTCACGGGACCCGTGACAATTTTGAACTGGTCCTTCGTCAGAAATGACCAGCCGAGgtgagcttttgtctttctcatcgacatctttgctaactggccttacgtttcattcaccacag-----------------------------------

upper sequence: Vv08s0056g01570.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ28889 (Selaginella moellendorffii), 5'ss of exon 9
CCACCATGGCTCAGAGCATGACTGCTCGCCCAATGAAGGGAATGCTTACTGGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgta----ttaagaaaactcataaaaagcggcttaagaaagatgtatatctctctgaaactaataatagtttgcatgatttatatggcttcttttcag
|  ||    | |||||| | |||    | || |||||||||||||| || || || || || ||| ||||||||||||||||  ||||||||||||| ||||     ||       |||||  | | |      |    |   ||  | ||  |   | | |  | ||                             
CTTCCTACTCGCAGAGCCTCACTAAGAGGCCCATGAAGGGAATGCTCACGGGACCCGTGACAATTTTGAACTGGTCCTTCGTCAGAAATGACCAGCCGAGgtgagcttttgtctttctcatcgacatctttgctaactggtcttacgtttcattc--attcaccacag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110400294|gb|EC966852.1|EC966852
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110702834|gb|EE079152.1|EE079152
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|32269944|gb|CD719103.1|CD719103
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|294965861|gb|GW837344.1|GW837344
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGACGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110405158|gb|EC970694.1|EC970694
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTTGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110699661|gb|EE076856.1|EE076856
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110374362|gb|EC939061.1|EC939061
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110404481|gb|EC969603.1|EC969603
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110429998|gb|EC996518.1|EC996518
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|32248141|gb|CD713960.1|CD713960
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110426553|gb|EC992966.1|EC992966
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110376456|gb|EC941522.1|EC941522
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110403691|gb|EC969387.1|EC969387
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTATGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|161721696|gb|FC070122.1|FC070122
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTT
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTT
EST: gi|33405706|gb|CF211333.1|CF211333
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110381130|gb|EC946448.1|EC946448
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110383670|gb|EC948053.1|EC948053
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAAAGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTAAGGG--TCAAGGACGAAGTGGAGG
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTT-GGCCATCAAGGACGAAGTGGAGG
EST: gi|110698652|gb|EE076398.1|EE076398
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         AATTTGAA-CCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAAG
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagA-TTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGG
EST: gi|110402853|gb|EC963625.1|EC963625
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|29785954|gb|CB343329.2|CB343329
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110422645|gb|EC988972.1|EC988972
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|30324405|gb|CD007667.1|CD007667
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110690135|gb|EE066968.1|EE066968
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|33408742|gb|CF214369.1|CF214369
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATC
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATC
EST: gi|161710718|gb|FC059069.1|FC059069
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110687537|gb|EE065057.1|EE065057
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|37188506|gb|CF607855.1|CF607855
EST:     TCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: TCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110688905|gb|EE067993.1|EE067993
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110690652|gb|EE068000.1|EE068000
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|33409401|gb|CF215028.1|CF215028
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA