Sequence
atgc intronic sequence ATGC exonic sequenceGTTGGAGGGACAAATATTAGAGTTGGGGGAATGGCAAAGGGTTCTGGGATGATCCATCCAAATATGGCTACCATGCTTGGTgtgcgtctctgttttctacatgtcctgttctgcaaagtaaatattcttattccactttcttgataggactactttgttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g03320.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os03g17120.2 (Oryza sativa), 5'ss of exon 9
GTTGGAGGGACAAATATTAGAGTTGGGGGAATGGCAAAGGGTTCTGGGATGATCCATCCAAATATGGCTACCATGCTTGGTgtgcgt-ctctgttttctacatgtcctgttctgcaaagtaaatattcttattccactttcttgataggacta--ctttgttccag---------------
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ATTGGAGGAGTGCCTATCAAAATAGGAGGAATGGCCAAAGGTTCTGGGATGATTCATCCAAATATGGCAACAATGCTTGGTgtaagttctgtatcaatctcattttccacacagtcctactcctctattgatccctttctcaaggcatgtatgagcttcattataaccctttttcttacag
upper sequence: Vv08s0040g03320.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G044237_T01 (Zea mays), 5'ss of exon 8
GTTGGAGGGACAAATATTAGAGTTGGGGGAATGGCAAAGGGTTCTGGGATGATCCATCCAAATATGGCTACCATGCTTGGTgtgcgtctctgttttctacatgtcctgttctgcaaagtaaatattcttattccactttcttgataggactactttgttccag
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ATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGTgtatgttcccaccctc-aggttcccccttcctctattgaggcatg--tagcaaagtttgatggccatttttttctactacag
upper sequence: Vv08s0040g03320.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G19450.2 (Glycine max), 5'ss of exon 10
GTTGGAGGGACAAATATTAGAGTTGGGGGAATGGCAAAGGGTTCTGGGATGATCCATCCAAATATGGCTACCATGCTTGGTgtgcgtctctgttttctacatgtcctgttctgcaaagtaaatattcttattccactttcttgataggactactttgttccag
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ATTGGAGGAACTAAGGTCAGAGTTGGGGGAATGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGgtatgttttacttgatgcttctttcttatttggaatatatagatttaactgtccgttccttga---attttatctactgtag
upper sequence: Vv08s0040g03320.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G05090.1 (Glycine max), 5'ss of exon 9
GTTGGAGGGACAAATATTAGAGTTGGGGGAATGGCAAAGGGTTCTGGGATGATCCATCCAAATATGGCTACCATGCTTGGTgtgcgtctctgttttctacatgtcctgttctgcaaagtaaatattcttattccactttcttgataggactac-tttgttccag
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GTTGGAGGAACTAGGGTCAGAGTTGGGGGAATGGCTAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGgtatgtct-tacttgatgcttctttc-ttatttggaatatgtagatttaa--cagtccattccttgaactgtatctactctag
upper sequence: Vv08s0040g03320.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ32643 (Selaginella moellendorffii), 5'ss of exon 9
GTTGGAGGGACAAATATTAGAGTTGGGGGAATGGCAAAGGGTTCTGGGATGATCCATCCAAATATGGCTACCATGCTTGGTgtgcgtctctgttttctacatgtcctgttctgcaaagtaaatattcttattccactttcttgataggactactttgttccag
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GTGGGAGGAACGACCGTTAAGATCGGTGGCATGGCGAAAGGATCTGGGATGATCCATCCAAACATGGCGACGATGCTTAGTgtaatccttatttgattatcaagaatgaatcttgagtt---tattcgcag--------------------------------
upper sequence: Vv08s0040g03320.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ20784 (Selaginella moellendorffii), 5'ss of exon 9
GTTGGAGGGACAAATATTAGAGTTGGGGGAATGGCAAAGGGTTCTGGGATGATCCATCCAAATATGGCTACCATGCTTGGTgtgcgtctctgttttctacatgtcctgttctgcaaagtaaatattcttattccactttcttgataggactactttgttccag
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GTGGGAGGAACGACCGTTAAGATCGGTGGCATGGCGAAAGGATCTGGGATGATCCATCCAAACATGGCGACGATGCTTAGTgtaatccttatttgattatcaagaatgt-ctccaaatcttgagtttattcgcag----------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689373|gb|EC937903.1|EC937903EST: TGGCCAAGGGTTCTGGGATGATCCATCCAAATATGGCTACCATGCTTGGT GTCGTAACAACTGATGCCTTGGTTG
genomic: TGGCAAAGGGTTCTGGGATGATCCATCCAAATATGGCTACCATGCTTGGTgtgcgtctct ... tttgttccagGTCGTAACAACTGATGCCTTGGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGGAGGGACAAATATTAGAGTTGGGGGAATGGCAAAGGGTTCTGGGATGATCCATCCAAATATGGCTACCATGCTTGGTgtgcgtctctgttttctacatgtcctgttctgcaaagtaaatattcttattccactttcttgataggactactttgttccag
- - - - - - - - - - - - - - - - GCAAAG