Sequence
atgc intronic sequence ATGC exonic sequenceGGGGAGGCCCTTTTCCAAACACATGAGAACTTGGAACATCTTGCAATGATGGAGAGGGTGTTGGGACCTCTGCCCCAACATATGGTGCTGAGAGCTGAgtaagatagagtttgtcggttgttccttttttgtgcattctttcactgcttctacattggcaattttcttacaccttttctgatccctatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g02640.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA19G35800.1 (Glycine max), 5'ss of exon 8
GGGGAGGCCCTTTTCCAAACACATGAGAACTTGGAACATCTTGCAATGATGGAGAGGGTGTTGGGACCTCTGCCCCAACATATGGTGCTGAGAGCTGAgtaagatagagtttgtcggttgttccttttt-tgtgcattctttcactgcttctacattggcaattttcttacaccttttctgatccctatgcag-------------------
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GGAGAGGCAGTTTTCCAAACACATGAGAACTTGGAACATCTTGCCATGATGGAGAGAGTTTTAGAACCACTACCTCCGAATATGGTGGTCAGGGTCGAgtaagcttttgaattctctttgcttttggaaatatgcattctctt-taacctttctctggattttcatgtaatacctaatcttgctgtcgtcgagctgaaaagtattttaaaag
upper sequence: Vv08s0040g02640.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA03G33100.1 (Glycine max), 5'ss of exon 10
GGGGAGGCCCTTTTCCAAACACATGAGAACTTGGAACATCTTGCAATGATGGAGAGGGTGTTGGGACCTCTGCCCCAACATATGGTGCTGAGAGCTGAgtaagatagagtttgtcggttgttccttttttgtgcattctttcactgcttctacattggcaattttcttacaccttttctgatccctatgcag
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GGAGAGGCACTTTTCCAAACACATGAGAACTTGGAACATCTTGCCATGATGGAAAGAGTTCTAGGGCCACTACCTCCCCATATGGTGGTCAGGGCCGAgtaagctt---ttgaattctctttgcttttggaaatatgcattttctataacctttctctggattttcatgtaa--tacctgatct---tgcag
upper sequence: Vv08s0040g02640.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G53570.2 (Arabidopsis thaliana), 5'ss of exon 11
GGGGAGGCCCTTTTCCAAACACATGAGAACTTGGAACATCTTGCAATGATGGAGAGGGTGTTGGGACCTCTGCCCCAACATATGGTGCTGAGAGCTGAgtaagatagagtttgtcggttgttccttttttgtgcattctttcactgctt---ctacattggcaattttcttacaccttttctgatcc---ctatgcag
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GGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAACATTTGGCCATGATGGAAAGGGTCCTAGGACCTTTACCACCTCATATGGTGCTCAGAGCCGAgtaagaacaataatatcatcctatttgcagcatcagataccagcagaaaataacttgaactgtca--tttcttatatcaaaaccaaaacggttcttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71888823|gb|DT037878.1|DT037878EST: ATGGAGAGGGTGTTGGGACCTCTGCCCCAACATATGGTGCTGAGAGCTGA CCGCCGTGCTGAGAAATATTTCAGGAGAGGTGCACGATTAGATTGGCCCGA
genomic: ATGGAGAGGGTGTTGGGACCTCTGCCCCAACATATGGTGCTGAGAGCTGAgtaagataga ... ccctatgcagCCGCCGTGCTGAGAAATATTTCAGGAGAGGTGCACGATTAGATTGGCCCGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGGAGGCCCTTTTCCAAACACATGAGAACTTGGAACATCTTGCAATGATGGAGAGGGTGTTGGGACCTCTGCCCCAACATATGGTGCTGAGAGCTGAgtaagatagagtttgtcggttgttccttttttgtgcattctttcactgcttctacattggcaattttcttacaccttttctgatccctatgcag
- - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA