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GGTTTCACTTGTTGGTAGAGGTTGCCTTCTGGGTTTTATTGATTTGGTCAGATCTGCTGATACTGAGGCTGCAAAGCTTGGGCTTCAATTCATGGAGCTGgtaagcaaatataatataccctgtcaatttgctgctagttatacctagtattttgttcattgtccattgcatattagacaagattgcttttgtttctggt...
species | Vitis vinifera |
transcript | Vv08s0040g02290.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GATCTGCTGATACTGAGGCTGCAAAGCTTGGGCTTCGATTCATGGAACTG GTCCTAAAGGGGATGCCAAATGGTGAGGGTCCAAAGCTTGTGGAGAGAGAGEST: gi|110361396|gb|EC924864.1|EC924864
genomic: GATCTGCTGATACTGAGGCTGCAAAGCTTGGGCTTCAATTCATGGAGCTGgtaagcaaat ... tggcacacagGTCCTAAGGGGGATGCCAAATGGTGAGGGTCCAAAGCTTGTGGAGAGAGAG
EST: GATCTGCTGATACTGAGGCTGCAAAGCTTGGGCTTCAATTCATGGAGCTG GTCTTAAGGGGGATGCCAAATGGTGAGGGTCCAAAGCTTGTGGAGAGAGAGEST: gi|351027685|gb|FQ446852.1|FQ446852
genomic: GATCTGCTGATACTGAGGCTGCAAAGCTTGGGCTTCAATTCATGGAGCTGgtaagcaaat ... tggcacacagGTCCTAAGGGGGATGCCAAATGGTGAGGGTCCAAAGCTTGTGGAGAGAGAG
EST: GATCTGCTGATACTGAGGCTGCAAAGCTTGGGCTTCAATTCATGGAGCTG GTCCTAAGGGGGATGCCAAATGGTGAGGGTCCAAAGCTTGTGGAGAGAGAGEST: gi|349825151|gb|FQ415698.1|FQ415698
genomic: GATCTGCTGATACTGAGGCTGCAAAGCTTGGGCTTCAATTCATGGAGCTGgtaagcaaat ... tggcacacagGTCCTAAGGGGGATGCCAAATGGTGAGGGTCCAAAGCTTGTGGAGAGAGAG
EST: GATCTGCTGATACTGAGGCTGCAAAGCTTGGGCTTCAATTCATGGAGCTG GTCCTAAGGGGGATGCCAAATGGTGAGGGTCCAAAGCTTGTGGAGAGAGAG
genomic: GATCTGCTGATACTGAGGCTGCAAAGCTTGGGCTTCAATTCATGGAGCTGgtaagcaaat ... tggcacacagGTCCTAAGGGGGATGCCAAATGGTGAGGGTCCAAAGCTTGTGGAGAGAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTTCACTTGTTGGTAGAGGTTGCCTTCTGGGTTTTATTGATTTGGTCAGATCTGCTGATACTGAGGCTGCAAAGCTTGGGCTTCAATTCATGGAGCTGgtaagcaaatataatataccctgtcaatttgctgctagttatacctagtattttgttcattgtccattgcatattagacaagattgcttttgtttctggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaga