Sequence
atgc intronic sequence ATGC exonic sequenceGTCAGTGGAGTGGCTTTTGATCCATTTTGGTCACCGCCAAATTCAGATGGCACGGGGGAAAATATTGTGTATCGTTTTGGTTCTGTTGGTCAGgtatgcaaaaaacatctgtatggtcatggattatcatcaatatcatggatgacaaatttcatcagcgatggatatcttttcttagtgatctccttatatc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os12g07450.3 (Oryza sativa), 5'ss of exon 10
GTCAGTGGAGTGGCTTTTGATCCATTTTGGTCACCGCCAAATTCAGATGGCACGGGGGAAAATATTGTGTATCGTTTTGGTTCTGTTGGTCAGgtatgcaaaaaacatctgtatggtcatggattat-catcaatatcatggatgacaaat--ttcatcagcgatggatatcttttcttagtgatctccttatatc
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GTCAGTGGAGTTTCTTTTGATTCGTATTGGTCTCCTCCGAATTCTGATGGAACAGGAGAAAATACCGTGTATCGTTTTGGTTCTGTTGGTCAGgtatcacaaatttatatagctggagatatagtatgcagtctgtgcttttatgacatgtccttaatgtttaactcatgtagtatcaaagtt-tctttttgag--
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G096070_T01 (Zea mays), 5'ss of exon 10
GTCAGTGGAGTGGCTTTTGATCCATTTTGGTCACCGCCAAATTCAGATGGCACGGGGGAAAATATTGTGTATCGTTTTGGTTCTGTTGGTCAGgtatgcaaaaaacatctgtatggtcatggattatcatcaatatcatggatgacaaatttcatcagcgatggatatcttttcttagtgatctccttatatc
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GTCAGTGGAGTTGCTTTTGATTCATATTGGTCCCCACCAAGTTCTGATGGAAATGGAGAAAAT---GTATATCGCTTTGGTTCTGTTGGGCAGgtatgcctagtttatatagttagaattagtttgaattttgaatattgcaacgcaacttatgtgtgttcaaaatatatgggaattgttgcaagctctaatt
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA19G36480.2 (Glycine max), 5'ss of exon 5
GTCAGTGGAGTGGCTTTTGATCCATTTTGGTCACCGCCAAATTCAGATGGCACGGGGGAAAATATTGTGTATCGTTTTGGTTCTGTTGGTCAGgtatgcaaaaaacatctgtatggtcatggattatcatcaatatcatggatgacaaatttcatcagcgatggatatcttttcttagtgatctccttatatc--------
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GTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCTCCAAATTCAAATGACAATGGAGAGACTATTATGTATCGTTTTGGTTCTGTTGGTCAGgtactcagaaaaa---tgtttcattata-atatttactttttctatgtgtagct--tttcagc--ctatgtaaaactcatcaatatacctaacatagatggatctgtg
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 10
GTCAGTGGAGTGGCTTTTGATCCATTTTGGTCACCGCCAAATTCAGATGGCACGGGGGAAAATATTGTGTATCGTTTTGGTTCTGTTGGTCAGgtatgcaaaaaacatctgtatggtcatggattatcatcaatatcatggatgacaaatttcatcagcgatggatatcttttctta-gtgatctccttatatc
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GTCAGTGGAGTTGCTTTTGATTCATATTGGACATCACCAAATTCAAATGACAATGGAGAGACTGTTACATATCGTTTTGGTTCTGTTGGTCAGgtgctcagaaaaatgtttcattataatttttactttttctttgtgtagcttttcattctaagtaaaactcattggtatacctaacatggatctgtggtag-
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT2G37160.1 (Arabidopsis thaliana), 5'ss of exon 10
GTCAGTGGAGTGGCTTTTGATCCATTTTGGTCACCGCCAAATTCAGATGGCACGGGGGAAAATATTGTGTATCGTTTTGGTTCTGTTGGTCAGgtatgcaaaaaacatctgtatggtcatggattatcatcaatatcatggat-gacaaatttcatcagcgatggatatcttttcttagtgatctccttatatc
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GTAAGTGGTGTGGCGTTTGATTCGTATTGGTCGTCACCAAATTCAGAGGGGTCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCAGgtattcagttatactaaacacttttttgctttaacgttgagagtataccttgacctatatc-tgagaattgaacagtgttaatacctttatttctattagt
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT2G37160.2 (Arabidopsis thaliana), 5'ss of exon 10
GTCAGTGGAGTGGCTTTTGATCCATTTTGGTCACCGCCAAATTCAGATGGCACGGGGGAAAATATTGTGTATCGTTTTGGTTCTGTTGGTCAGgtatgcaaaaaacatctgtatggtcatggattatcatcaatatcatggat-gacaaatttcatcagcgatggatatcttttcttagtgatctccttatatc
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-----TGGTGTGGCGTTTGATTCGTATTGGTCGTCACCAAATTCAGAGGGGTCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCAGgtattcagttatactaaacacttttttgctttaacgttgagagtataccttgacctatatc-tgagaattgaacagtgttaatacctttatttctattagtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30301922|gb|CB978716.1|CB978716EST: AGATGGCACGGGGGAAAATGTTGTGTACCGTTGATCNT-CTGTTGGTCAG GACACACAGTTACTTCTATGGGACCTGGAAATGGATGAGATTGTAGTACCA
genomic: AGATGGCACGGGGGAAAATATTGTGTATCGTTT-TGGTTCTGTTGGTCAGgtatgcaaaa ... ctgtgagcagGACACACAGTTACTTCTATGGGACCTGGAAATGGATGAGATTGTAGTGCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCAGTGGAGTGGCTTTTGATCCATTTTGGTCACCGCCAAATTCAGATGGCACGGGGGAAAATATTGTGTATCGTTTTGGTTCTGTTGGTCAGgtatgcaaaaaacatctgtatggtcatggattatcatcaatatcatggatgacaaatttcatcagcgatggatatcttttcttagtgatctccttatatc
- - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgacaaa