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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgtaacataataaagaatattcacaagtctcttccccacgttaaccaaaattttgtcctttgatttcaagcgctctgatcaaacatgattttttttttgcttcaatcctctgcttgatttattcttttttcag

Basic information

species Vitis vinifera
transcript Vv08s0040g01040.t01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351033160|gb|FQ461932.1|FQ461932
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|37188456|gb|CF607805.1|CF607805
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|349827848|gb|FQ422716.1|FQ422716
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|77583953|gb|DV221017.1|DV221017
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|351043304|gb|FQ444025.1|FQ444025
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|351056246|gb|FQ453708.1|FQ453708
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|351055541|gb|FQ442337.1|FQ442337
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|110709191|gb|EE084434.1|EE084434
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|34545450|gb|CF513682.1|CF513682
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|110707772|gb|EE084549.1|EE084549
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|351053966|gb|FQ441732.1|FQ441732
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|77583880|gb|DV220977.1|DV220977
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|71875979|gb|DT025034.1|DT025034
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|110707915|gb|EE084860.1|EE084860
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|349815813|gb|FQ400978.1|FQ400978
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|352789896|gb|FQ478711.1|FQ478711
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|351040753|gb|FQ438297.1|FQ438297
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|71873082|gb|DT022137.1|DT022137
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|349826160|gb|FQ415965.1|FQ415965
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|351041354|gb|FQ447481.1|FQ447481
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAAAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|351040299|gb|FQ425385.1|FQ425385
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|77577309|gb|DV217367.1|DV217367
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|351016501|gb|FQ423928.1|FQ423928
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|349828939|gb|FQ419272.1|FQ419272
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|349824039|gb|FQ417426.1|FQ417426
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|351023398|gb|FQ432781.1|FQ432781
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|77580683|gb|DV219246.1|DV219246
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|77578243|gb|DV217899.1|DV217899
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|71876799|gb|DT025854.1|DT025854
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
EST: gi|351022732|gb|FQ428641.1|FQ428641
EST:     CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTG                         GTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT
genomic: CCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgta ... cttttttcagGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGgtatgctgtaacataataaagaatattcacaagtctcttccccacgttaaccaaaattttgtcctttgatttcaagcgctctgatcaaacatgattttttttttgcttcaatcctctgcttgatttattcttttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG