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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatattgcttggtctattaaatcagaaaaatatgccactcttttcttttcagcaagggtcatttttttccttgctcttcttgtttgaggttaccaattcagtgagggtgtttttccactattcttgtttgaggtttgttgtggttgtctttcgaactaaatattcatgttgggtacag

Basic information

species Vitis vinifera
transcript Vv08s0007g08110.t01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30132751|gb|CB918090.1|CB918090
EST:     TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|83275962|gb|DV939970.1|DV939970
EST:     TTGGTGAAGGAGAGTTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|110695893|gb|EE074430.1|EE074430
EST:     TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|110410507|gb|EC976190.1|EC976190
EST:     TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|110358248|gb|EC922324.1|EC922324
EST:     TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTTTTGGGCATGCCTCCTTATTTTAGGGGCTCTAAAGTTCTTG
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|110427310|gb|EC993745.1|EC993745
EST:     TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|110715335|gb|EE093264.1|EE093264
EST:     AGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: AGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|30252653|gb|CB970204.1|CB970204
EST:     TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|110703094|gb|EE079637.1|EE079637
EST:     TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAAGGGCTCTAAAGTTCTTG
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|110688154|gb|EE066378.1|EE066378
EST:     TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|110696827|gb|EE073281.1|EE073281
EST:     TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|110730631|gb|EE107931.1|EE107931
EST:     TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|22008496|gb|BQ793530.1|BQ793530
EST:     TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|83275755|gb|DV939763.1|DV939763
EST:     TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|110373043|gb|EC937250.1|EC937250
EST:     TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|110378825|gb|EC943977.1|EC943977
EST:     TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|30137479|gb|CB922817.1|CB922817
EST:     TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|110388620|gb|EC953390.1|EC953390
EST:     TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: gi|34320814|gb|CF373568.1|CF373568
EST:     TGGTCGACCAATAAAGTCCCTTTTG                         GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: TGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACGCCTTATTGGACAAGCATAAGGTAGAAGACACATTTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatattgcttggtctattaaatcagaaaaatatgccactcttttcttttcagcaagggtcatttttttccttgctcttcttgtttgaggttaccaattcagtgagggtgtttttccactattcttgtttgaggtttgttgtggttgtctttcgaactaaatattcatgttgggtacag

- - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - -  GGAGAA