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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTAGAGTTACCACACATACTGCGCAGgtaaagtctagatgtggtcctttgaactggctagattcctcacaatattcttgtttctgagttatttgcaagcttatgttctactgcattctttaactgc...

Basic information

species Vitis vinifera
transcript Vv08s0007g03250.t01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30253288|gb|CB970839.1|CB970839
EST:     GTTGTACGAGAAGTGATTGTTGAGCTAGAGTTACCCCACATACTGCGCAG                         TTGTGCCCGTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACA
genomic: GTTGTACGAGAAGTGATTGTTGAGCTAGAGTTACCACACATACTGCGCAGgtaaagtcta ... ggttatgcagTTGTGCCCGTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACA
EST: gi|27755146|gb|CB035901.1|CB035901
EST:     GTTGTACGAGAAGTGATTGTTGAGCTAGAGTTACCACACATACTGCGCAG                         TTGTGCCCGTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACA
genomic: GTTGTACGAGAAGTGATTGTTGAGCTAGAGTTACCACACATACTGCGCAGgtaaagtcta ... ggttatgcagTTGTGCCCGTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACA
EST: gi|110370952|gb|EC934597.1|EC934597
EST:     GTTGTACGAGAAGTGATTGTTGAGCTAGAGTTACCACACATACTGCGCAG                         TTGTGCCCGTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACA
genomic: GTTGTACGAGAAGTGATTGTTGAGCTAGAGTTACCACACATACTGCGCAGgtaaagtcta ... ggttatgcagTTGTGCCCGTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACA
EST: gi|32246890|gb|CD712709.1|CD712709
EST:     GTTGTACGAGAAGTGATTGTTGAGCTAGAGTTACCACACATACTACGCAG                         TTGTGCCCGTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACA
genomic: GTTGTACGAGAAGTGATTGTTGAGCTAGAGTTACCACACATACTGCGCAGgtaaagtcta ... ggttatgcagTTGTGCCCGTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACA
EST: gi|110413628|gb|EC979423.1|EC979423
EST:     GTTGTACGAGAAGTGATTGTTGAGCTAGAGTTACCACACATACTACGCAG                         TTGTGCCCGTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACA
genomic: GTTGTACGAGAAGTGATTGTTGAGCTAGAGTTACCACACATACTGCGCAGgtaaagtcta ... ggttatgcagTTGTGCCCGTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACA
EST: gi|27578573|gb|CB001268.1|CB001268
EST:     GTTGTACGAGAAGTGATTGTTGAGCTAGAGTTACCACACATACTACGCAG                         TTGTGCCCGTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACA
genomic: GTTGTACGAGAAGTGATTGTTGAGCTAGAGTTACCACACATACTGCGCAGgtaaagtcta ... ggttatgcagTTGTGCCCGTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACA
EST: gi|110423056|gb|EC989391.1|EC989391
EST:     GTTGTACGAGAAGTGATTGTTGAGCTAGAGTTACCACACATACTACGCAG                         TTGTGCCCGTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACA
genomic: GTTGTACGAGAAGTGATTGTTGAGCTAGAGTTACCACACATACTGCGCAGgtaaagtcta ... ggttatgcagTTGTGCCCGTGGCAGCCCAAAACGTCAACTACTGTATCAGAAAGCTAGACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTTCTCCATTCTGCAAAGTTGTACGAGAAGTGATTGTTGAGCTAGAGTTACCACACATACTGCGCAGgtaaagtctagatgtggtcctttgaactggctagattcctcacaatattcttgtttctgagttatttgcaagcttatgttctactgcattctttaactgc

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