Sequence
atgc intronic sequence ATGC exonic sequenceCTCAATGGACAGTTCCAGACAGTGAGTTGCGAGAGTCATTGAGGCTGGCAGTTGCTGAAGTTCTCCTACCTGCCTACAGATCTTTCATTAAACGTTTTGGgtatctgttttctcacactcgtgacctgttcttctaaaattcctgttgcttccttatcccttgattgttcaaatgtggtttgggtgttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g02340.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os12g06270.1 (Oryza sativa), 5'ss of exon 12
CTCAATGGACAGTTCCAGACAGTGAGTTGCGAGAGTCATTGAGGCTGGCAGTTGCTGAAGTTCTCCTACCTGCCTACAGATCTTTCATTAAACGTTTTGGgtatctgtttt---ctcacactcgtgacctgttcttctaaaattcctgttgcttccttatcccttgattgttca-aatgtggtttgggtgttacag-----
|||||||||| | || || || |||||||| || |||| || || ||||||||||||||| | || ||||| | |||||||| ||||||||||||||| | || | || | |||| | | ||| ||| | ||| || | ||||| |||| | | | | ||
CTCAATGGACTATACCTGATCAAGAATTGCGAGAATCTCTGAGACTTGCTGTTGCTGAAGTTCTCTTGCCAGCCTATCGGTCTTTCATCAAACGTTTTGGgtatgttggttagattttttcttctttcctggcatatgactattta-gttacccggttacagattaaccgttcataatgaaatgggcatatgccatatgcc
upper sequence: Vv08s0007g02340.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT5G52340.1 (Arabidopsis thaliana), 5'ss of exon 10
CTCAATGGACAGTTCCAGACAGTGAGTTGCGAGAGTCATTGAGGCTGGCAGTTGCTGAAGTTCTCCTACCTGCCTACAGATCTTTCATTAAACGTTTTGGgtatctgttttctcacactcgtgacctgttcttctaaaattcctgttgctt-----ccttatcccttgattgttcaaatgtggtttgggtgttacag
|||||||||||||| ||||| |||||||| || || | || || || ||||| |||||||| ||||||| | |||||| || |||||||||||||||| | | ||||| | | | | | || | | ||| | ||| || || |||| ||| || | |
GCCAATGGACAGTTCCGGACAGCGAGTTGCGTGAATCTCTTAGACTTGCTGTTGCGGAAGTTCTTTTACCTGCTTTCAGATCGTTTCTTAAACGTTTTGGgtaa--gatcaaaaacacttttaaacagattttgtttcgcgcttgtcaagaaagagttaaaagttttgtttctttggttgtg--ttgtgtatcag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110423988|gb|EC990341.1|EC990341EST: GTTGCTGAAGTTCTCCTACCTGCCTACAGATCTTTCATTAAACGTTTTGG GCCTATGATTGAAAATGGGAAAAACCCGCATAAGTACATCAGATACACTCC
genomic: GTTGCTGAAGTTCTCCTACCTGCCTACAGATCTTTCATTAAACGTTTTGGgtatctgttt ... ggtgttacagGCCTATGATTGAAAATGGGAAAAACCCGCATAAGTACATCAGATACACTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCAATGGACAGTTCCAGACAGTGAGTTGCGAGAGTCATTGAGGCTGGCAGTTGCTGAAGTTCTCCTACCTGCCTACAGATCTTTCATTAAACGTTTTGGgtatctgttttctcacactcgtgacctgttcttctaaaattcctgttgcttccttatcccttgattgttcaaatgtggtttgggtgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG