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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTGCGGTGATTGCAGGGGCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAAgtaatgaaaattatggtgttgccattttgttatgtttggttggtcattgtcatcttttggtgattgcttactgaaccaactttctttggcag

Basic information

species Vitis vinifera
transcript Vv08s0007g02270.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G012284_T01 (Zea mays), 5'ss of exon 8
CAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTGCGGTGATTGCAGGGGCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAAgtaatgaaaattatggtgttgccattttgttatgtttggttggtcattgtcatcttttggtgattgcttactgaaccaactttctttggcag
| || || ||||||||||||||||| |||||  |||| |||||||| ||||  |||||||||||| | |   ||||||| || ||||| || || |||||||||  |    |      | | |||  | || | | ||    ||  || |  | |     | | |    |   || ||| ||  ||  |   
CTGCTTTCGCATTCTTCTGCTTCTATCTTCTTATTGCAGTGATTGCTGGGGAGATGATGCTTGGATTGAAGCTAGTTTTTATCACAATTCACCCGATGAAgtaaccag--ctgatacctgggcatgctattttttctg--cagtt-ttattttttcaatatcactaacaaacaaatcaatttgtttcag---

upper sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 9
CAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTGCGGTGATTGCAGGGGCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAAgtaatgaaaattatggtg------ttgccattttgttatgtttggttggtcatt-gtcatcttttggtgattgcttactgaaccaactt-tctttggcag
| ||||||||||| ||||||||||||||||| ||||| |||||||| || || |||||||||||||| ||| ||||||||||||| || |||||||||||||||| |||||| || ||      ||  ||||||| |||   |  |||||  || || |||  ||  |  |  ||||       | ||| ||| ||||||
CTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTCATTACTATACATCCCATGAAgtaat-aaaattgtgctgacagatttatcattttgctatccatttttggtagtttgttatccctt--ttgtatcttataatgtgatcttatctctggcag

upper sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 10
CAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTGCGGTGATTGCAGGGGCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAAgtaatgaaaattatggtg------ttgccattttgttatgtttggttggtcattgtcatcttttggtgattgcttactgaaccaactt-tctttggcag
| ||||||||||| ||||||||||||||||| ||||| |||||||| || || |||||||||||||| ||| ||||||||||||| || |||||||||||||||| |||||| || ||      ||  |||  |||  |   |  || || ||| |  | |     |  |  ||||       | ||| ||| ||||||
CTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTCATTACTATACATCCCATGAAgtaat-aaaattgtgctgacagatttatcatcatgtgctccattttttgtaatt-tggtataccttttgtatcttatgatgtgatcttatctctggcag

upper sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA07G18160.1 (Glycine max), 5'ss of exon 10
CAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTGCGGTGATTGCAGGGGCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAAgtaatgaaaattatggtg------ttgccattttgttatgtttggttggtcatt-gtcatcttttggtgattgcttactgaaccaactttctttggcag
| ||||||||||| ||||||||||||||||| ||||| |||||||| || || |||||||||||||| ||| |||| |||||||| || |||||||||||||||| |||||| || ||      ||  ||||||  | |   |  |||||  || || |||  ||    ||    || ||     | | ||| ||||||
CTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTATTCATTACTATACATCCCATGAAgtaat-aaaattgtgctgacagatttatcatttttctctccatttttggtagtttgttatcccttttgtatcttataatgtgatca-tatctctggcag

upper sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 10
CAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTGCGGTGATTGCAGGGGCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAAgtaatgaaaatt--------atggtg--ttgccattt-tgtta-tgtttggttggtcattgtcat------cttttggtgattgcttactgaaccaactt-tctttggcag
| ||||||||||| ||||||||||||||||| ||||| |||||||| || || ||||||||||| || ||| ||||||||||||| || |||||||||||||||| ||| ||        |||      |  ||||  | ||  | |||  || |  || ||||       ||| |  ||||| || |||     ||||| ||| ||||||
CTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGAGCCATGATGCTTGGGCTGAGACTAGTTTTCATTACTATACATCCCATGAAgtaattaaactttgcaatctatgactatctatcattcatattgctttttaatttgcaatggtcacatactgcttctattgattactcactatgtgaacttatctatggcag

upper sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 10
CAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTGCGGTGATTGCAGGGGCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAAgtaatgaaaatt--------atggtg--ttgccattt-tgtta-tgtttggttggtcattgtca---------tcttttggtgattgcttactgaaccaactt-tctttggcag
| ||||||||||| ||||||||||||||||| ||||| |||||||| || || ||||||||||| || ||| ||||||||||||| || |||||||||||||||| ||| ||        |||      |  ||||  | ||  | |||  |  |   | ||||         ||| ||| | | | || |||     ||||| ||| ||||||
CTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCCGGAGCCATGATGCTTGGGCTGAGACTAGTTTTCATTACTATACATCCCATGAAgtaattaaactttgcaatctatgactatctatcattcatattgctttttaatctgcagtggtcacatactgcttctattgattactactcactatgtgaacttatctatggcag

upper sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 10
CAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTGCGGTGATTGCAGGGGCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAAgtaatgaaaattatggtgtt----gccattttgttatgttt---ggttggtcattgtcatcttttggtgattgctta-ctgaaccaactttctttggcag
| || ||||| |||||||| ||||||||||| ||||| || || || |||||||||||||| ||  | |   | || |||||||| || ||||| ||||||||||  |  | |  |  ||       |||| | ||| ||    |||   |||||  | ||| ||| |   || ||  |   | ||||||  ||  |   
CTGCCTTTGCTTTCTTCTGTTTCTACCTTCTACTTGCTGTTATCGCTGGGGCAATGATGCTGGGTTTGAAGCTGGTCTTCATTACCATTCATCCAATGAAgtaatccatctaaccggtttcaacattatttggctattttccaaggtcattcattaccttctcttgattgctgattggccatatcaacttatttcag---

upper sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 10
CAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTGCGGTGATTGCAGGGGCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAAgtaatgaaaattatggtgttgccat----tttgttatgtttggttggtcattgtcatcttttggtgattgctta-ctgaaccaactttctttggcag
| || ||||| |||||||| ||||| || || ||||| || ||||| |||||||||||||||||  | |   | || |||||||| || ||||| ||||||||||  |  || | || |||  ||    |||| ||| |  |     |   |||  |||| ||||   |  | | |  ||  |||||  ||  |   
CTGCCTTTGCTTTCTTCTGTTTCTATCTCCTACTTGCTGTTATTGCTGGGGCAATGATGCTTGGTTTGAAGCTGGTCTTCATTACCATTCATCCAATGAAgtaattcatcttgtagttttgaaatgttttttgctatttcagagatctttctgttttcttctggtttctcataagcctaattaacttgtttcag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30254542|gb|CB971287.1|CB971287
EST:     GCAATGATTCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAA                         GTGGGGTGCCACTCTTATGAACTCCTTTCTTTTTAATGTGGCACTTATTCT
genomic: GCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAAgtaatgaaaa ... tctttggcagGTGGGGTGCCACTCTTATGAACTCCTTTCTTTTTAATGTGGGACTTATTCT
EST: gi|294965055|gb|GW838858.1|GW838858
EST:     GCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAA                         GTGGGGTGCCACTCTTATGAACTCCTTTCTTTATACTGTGGGACTTATTCT
genomic: GCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAAgtaatgaaaa ... tctttggcagGTGGGGTGCCACTCTTATGAACTCCTTTCTTTTTAATGTGGGACTTATTCT
EST: gi|110361016|gb|EC924466.1|EC924466
EST:     GCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAA                         GTGGGGTGCCACTCTTATGAACTCCTTTCTTTTTAATGTGGGACTTATTCT
genomic: GCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAAgtaatgaaaa ... tctttggcagGTGGGGTGCCACTCTTATGAACTCCTTTCTTTTTAATGTGGGACTTATTCT
EST: gi|22009162|gb|BQ794196.1|BQ794196
EST:     GCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAA                         GTGGGGTGCCACTCTTATGAACTCCTTTCTTTTTAATGTGGGACTTATTCT
genomic: GCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAAgtaatgaaaa ... tctttggcagGTGGGGTGCCACTCTTATGAACTCCTTTCTTTTTAATGTGGGACTTATTCT