1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGGAACTGTCTGTTTGTCTATATATTCTTTGGTGGCTGCTATATTTGGCATGAACATCCCATATACATGGAGGAACGACCATGGATACATGTTCAAATGGgtatgtggagttcatcatctcactgccaaaaaaagaataaaaaaacacattgccaaggttttgattgtttagttttgttttttccctcaatttttatgcctag
species | Vitis vinifera |
transcript | Vv07s0141g00590.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGAACATCCCATATACATGGAGGAACGACCATGGATACATGTTCAAATGG GTGGTCATCCTCTCAGGAATGGCTTGTGCATCCATTTTCTTGTCAATAATTEST: gi|110429022|gb|EC995509.1|EC995509
genomic: TGAACATCCCATATACATGGAGGAACGACCATGGATACATGTTCAAATGGgtatgtggag ... ttatgcctagGTGGTCATCCTCTCAGGAATGGCTTGTGCATCCATTTTCTTGTCAATAATT
EST: CGACCATGGATACATGTTCAAATGG GTGGTCATCCTCTCAGGAATGGCTTGTGCATCCATTTTCTTGTCAATAATTEST: gi|51052640|gb|CO819662.1|CO819662
genomic: CGACCATGGATACATGTTCAAATGGgtatgtggag ... ttatgcctagGTGGTCATCCTCTCAGGAATGGCTTGTGCATCCATTTTCTTGTCAATAATT
EST: ACCATGGATACATGTTCAAATGG GTGGTCATCCTCTCAGGAATGGCTTGTGCATCCATTTTCTTGTCAATAATT
genomic: ACCATGGATACATGTTCAAATGGgtatgtggag ... ttatgcctagGTGGTCATCCTCTCAGGAATGGCTTGTGCATCCATTTTCTTGTCAATAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAACTGTCTGTTTGTCTATATATTCTTTGGTGGCTGCTATATTTGGCATGAACATCCCATATACATGGAGGAACGACCATGGATACATGTTCAAATGGgtatgtggagttcatcatctcactgccaaaaaaagaataaaaaaacacattgccaaggttttgattgtttagttttgttttttccctcaatttttatgcctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA