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GGAAAGACGGATCCCGAGGTTAAAGCTGCAGCAGGGGTTTAGCATGAGTTCCAATCTATCTGATGGGCATGATAGCACTCCCACTTTTGgtaagaatagttgcccaacttgatctcatgatcttttagcaaatatgttccatttgggttgctggagcttttcagtttgccttggttcctttcccttttt...
species | Vitis vinifera |
transcript | Vv07s0141g00390.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TAGCATGAGTTCCAATCTATCTGATGGGCATGATAGCACTCCCACTTTTG GAAACTGAGGTATGAACATGCAGCGGAAATGGAGCCTTACTAGAGGAGTGCEST: gi|110380596|gb|EC945872.1|EC945872
genomic: TAGCATGAGTTCCAATCTATCTGATGGGCATGATAGCACTCCCACTTTTGgtaagaatag ... tcaatgacagGAAACTGAGGTATGAACATGCAGCGGAAATGGAGCCTTACTAGAGGAGTGC
EST: TAGCATGAGTTCCAATCTATCTGATGGGCATGATAGCACTCCCACTTTTG GAAACTGAGGTATGAACATGCAGCGGAAATGGAGCCTTACTAGAGGAGTGCEST: gi|352764472|gb|FQ472829.1|FQ472829
genomic: TAGCATGAGTTCCAATCTATCTGATGGGCATGATAGCACTCCCACTTTTGgtaagaatag ... tcaatgacagGAAACTGAGGTATGAACATGCAGCGGAAATGGAGCCTTACTAGAGGAGTGC
EST: TAGCATGAGTTCCAATCTATCTGATGGGCATGATAGCACTCCCACTTTTG GAAACTGAGGTATGAACATGCAGCGGAAATGGAGCCTTACTAGAGGAGTGCEST: gi|30300982|gb|CB977776.1|CB977776
genomic: TAGCATGAGTTCCAATCTATCTGATGGGCATGATAGCACTCCCACTTTTGgtaagaatag ... tcaatgacagGAAACTGAGGTATGAACATGCAGCGGAAATGGAGCCTTACTAGAGGAGTGC
EST: TAGCATNTCTTCCAATCTATCTGATGGGCATGATAGCACTCCCACTTTTG GAAACTGAGGTATGAACATGCAGCGGAAATGGAGCCTTACTAGAGGAGTGCEST: gi|30300914|gb|CB977708.1|CB977708
genomic: TAGCATGAGTTCCAATCTATCTGATGGGCATGATAGCACTCCCACTTTTGgtaagaatag ... tcaatgacagGAAACTGAGGTATGAACATGCAGCGGAAATGGAGCCTTACTAGAGGAGTGC
EST: TAGCATGAGTTCCAATCTATCTGATGGGCATGATAGCACTCCCACTTTTG GAAACTGAGGTATGAACATGCAGCGGANATGGAGCCTTACTAGAGEST: gi|30329705|gb|CD012967.1|CD012967
genomic: TAGCATGAGTTCCAATCTATCTGATGGGCATGATAGCACTCCCACTTTTGgtaagaatag ... tcaatgacagGAAACTGAGGTATGAACATGCAGCGGAAATGGAGCCTTACTAGAG
EST: TAGCATGAGTTCCAATCTATCTGATGGGCATGATAGCACTCCCACTTTTG GAAACTGAGGTATGAACATGCGGCGGAAATGGAGCCTTACTAGAGGAGTGC
genomic: TAGCATGAGTTCCAATCTATCTGATGGGCATGATAGCACTCCCACTTTTGgtaagaatag ... tcaatgacagGAAACTGAGGTATGAACATGCAGCGGAAATGGAGCCTTACTAGAGGAGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAAGACGGATCCCGAGGTTAAAGCTGCAGCAGGGGTTTAGCATGAGTTCCAATCTATCTGATGGGCATGATAGCACTCCCACTTTTGgtaagaatagttgcccaacttgatctcatgatcttttagcaaatatgttccatttgggttgctggagcttttcagtttgccttggttcctttcccttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc