1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AATGGAAGTCGTTAACAGGCTTACTACAGCGGTTGAACTTCCCACCGAATTTGTACACATGTACATAACTAATTGTATATCATCTTGTCAAAACATCAAGgtccttttcttcactttgctttctgatagcattttatattgttccttgacaaacggatttcagcaaaattctgactggatttatcgctgggcttgagtaa...
species | Vitis vinifera |
transcript | Vv07s0130g00310.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTGTACACATGTACATAACTAATTGTATATCATCTTGTCAAAACATCAAG GATAGGTACATGCAGAACAGACTTGTGAGACTTGTATGTGTATTCTTGCAGEST: gi|110358574|gb|EC922883.1|EC922883
genomic: TTGTACACATGTACATAACTAATTGTATATCATCTTGTCAAAACATCAAGgtccttttct ... atctttccagGATAGGTACATGCAGAACAGACTTGTGAGACTTGTATGTGTATTCTTGCAG
EST: TTGTACACATGTACATAACTAATTGTATATCATCTTGTCAAAACATCAAG GATAGGTACATGCAGAACAGACTTGTGAGACTTGTATGTGTATTCTTGCAGEST: gi|26260610|gb|CA811673.1|CA811673
genomic: TTGTACACATGTACATAACTAATTGTATATCATCTTGTCAAAACATCAAGgtccttttct ... atctttccagGATAGGTACATGCAGAACAGACTTGTGAGACTTGTATGTGTATTCTTGCAG
EST: TTGTACACATGTACATAACTAATTGTATATCATCTTGTCAAAACATCAAG GATAGGTACATGCAGAACAGACTTGTGAGACTTGTATGTGTATTCTTGCAGEST: gi|26261165|gb|CA812228.1|CA812228
genomic: TTGTACACATGTACATAACTAATTGTATATCATCTTGTCAAAACATCAAGgtccttttct ... atctttccagGATAGGTACATGCAGAACAGACTTGTGAGACTTGTATGTGTATTCTTGCAG
EST: TTGTACACATGTACATAACTAATTGTATATCATCTTGTCAAAACATCAAG GATAGGTACATGCAGAACAGACTTGTGAGACTTGTATGTGTATTCTTGCAGEST: gi|110362733|gb|EC926283.1|EC926283
genomic: TTGTACACATGTACATAACTAATTGTATATCATCTTGTCAAAACATCAAGgtccttttct ... atctttccagGATAGGTACATGCAGAACAGACTTGTGAGACTTGTATGTGTATTCTTGCAG
EST: TTGTACACATGTACATAACTAATTGTATATCATCTTGTCAAAACATCAAG GATAGGTACATGCAGAACAGACTTGTGAGACTTGTATGTGTATTCTTGCAG
genomic: TTGTACACATGTACATAACTAATTGTATATCATCTTGTCAAAACATCAAGgtccttttct ... atctttccagGATAGGTACATGCAGAACAGACTTGTGAGACTTGTATGTGTATTCTTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGAAGTCGTTAACAGGCTTACTACAGCGGTTGAACTTCCCACCGAATTTGTACACATGTACATAACTAATTGTATATCATCTTGTCAAAACATCAAGgtccttttcttcactttgctttctgatagcattttatattgttccttgacaaacggatttcagcaaaattctgactggatttatcgctgggcttgagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcaaaa