1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AACTGGTGTAACAGTATTTGTCAATCCTTACACTGAACCTGATGCTGAAGAAGAGGAAGAGAAAACCAAAGATGGGAAGAATGCCGAGGATGAAGAAAATgttagtttctgaaccctcaaattgaggagtgggaccttttgttcccgttttttttttacccttttcctttcaattcttgagtaatcacatggattgttgttgatacatttcag
species | Vitis vinifera |
transcript | Vv07s0129g00040.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAGAGGAAGAGAAAACCAAAGATGGGAAGAATGCCGAGGATGAAGAAAAT GATAAGGTTGGGGCATGGTTTAGCAATCCAGGTACAGGAACAGCAGAGCCTEST: gi|32457546|gb|CD798720.1|CD798720
genomic: AAGAGGAAGAGAAAACCAAAGATGGGAAGAATGCCGAGGATGAAGAAAATgttagtttct ... tacatttcagGATAAGGTTGGGGCATGGTTTAGCAATCCAGGTACAGGAACAGCAGAGCCT
EST: GAGGAAGAGAAAACCAAAGATGGGAAGAATGCCGCGAGGATGAAGAAAAT GATAAGGTTGGGGCATGGTTTAGCAATCCAGGTACAGGAACAGCAGAGCCTEST: gi|110715857|gb|EE094386.1|EE094386
genomic: GAGGAAGAGAAAACCAAAGATGGGAAGAATG-C-CGAGGATGAAGAAAATgttagtttct ... tacatttcagGATAAGGTTGGGGCATGGTTTAGCAATCCAGGTACAGGAACAGCAGAGCCT
EST: AAGAGGAAGAGAAAACCAAAGATGGGAAGAATGCCGAGGATGAAGAAAAT GATAAGGTTGGGGCATGGTTTAGCAATCCAGGTACAGGAACAGCAGAGCCT
genomic: AAGAGGAAGAGAAAACCAAAGATGGGAAGAATGCCGAGGATGAAGAAAATgttagtttct ... tacatttcagGATAAGGTTGGGGCATGGTTTAGCAATCCAGGTACAGGAACAGCAGAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTGGTGTAACAGTATTTGTCAATCCTTACACTGAACCTGATGCTGAAGAAGAGGAAGAGAAAACCAAAGATGGGAAGAATGCCGAGGATGAAGAAAATgttagtttctgaaccctcaaattgaggagtgggaccttttgttcccgttttttttttacccttttcctttcaattcttgagtaatcacatggattgttgttgatacatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA