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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAAATATGCCAACGAAGATGTGTCACTTGGTGCCTGGTTTATTGGTCTCGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTGgtacacggttcttccattatattctttactcatcttttttcatgtaaaagtattcctcccaaatggggttctttttgaacacttaattttggttgtttcag

Basic information

species Vitis vinifera
transcript Vv07s0031g03090.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g03090.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os02g35870.1 (Oryza sativa), 5'ss of exon 10
CACAAATATGCCAACGAAGATGTGTCACTTGGTGCCTGGTTTATTGGTCTCGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTGgtacacggttcttccattatattctttactcatcttttttcatgtaaaagtattcctcccaaatggggttctttttgaacacttaattttggttgtttcag
||||||| ||| ||||||||||| ||||||||| | |||||||||||| | |||||  | || || |||||  | ||| | || || ||||||||||| ||| |    ||| || ||  |   |  | ||  || |    |   |  |  | ||| ||||        |||  | | ||   | |||      |    |||
CACAAATTTGCGAACGAAGATGTATCACTTGGTTCATGGTTTATTGGTTTAGAAGTGAATCATATCGATGAAAGAAACATGTGCTGCGGGACTCCACCAGgtgcgt--ttcctcgatcttgaccaatgcttctcgtaca-cgcttccattttttcatccc--------ttccctctaaattttgaataacaact-ccgcag

upper sequence: Vv07s0031g03090.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os09g27950.1 (Oryza sativa), 5'ss of exon 10
CACAAATATGCCAACGAAGATGTGTCACTTGGTGCCTGGTTTATTGGTCTCGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTGgtacacggttcttccattatattctttactcatcttttttcatgta--aaagtattcctcccaaatggggttctttttgaacacttaattttggttgtttcag
||||||||||| |||||||| || |||||||| || |||||||| ||| | || || |||||||| || ||  |  || | || ||||| || ||||| ||| ||   ||||||  ||    | ||| || |   |   | ||  |  |  ||| |  |  | |||  |    || |  |||    |                
CACAAATATGCAAACGAAGACGTTTCACTTGGCGCATGGTTTATCGGTTTAGACGTGGAGCACATTGACGACAGAGACATGTGCTGTGGAACACCACCAGgt-cagttttcttcagttgctctgttt-ctgaatatcactaattcactacggtactaattgctaatatgtgctttgtgaaacttgcag---------------

upper sequence: Vv07s0031g03090.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G77810.2 (Arabidopsis thaliana), 5'ss of exon 10
CACAAATATGCCAACGAAGATGTGTCACTTGGTGCCTGGTTTATTGGTCTCGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTGgtacacggttcttccattatattctttactcatcttttttcatgtaaaagtattcctcccaaatggggttctttttgaacacttaattttggttgtttcag
|| || |||||||| |||||||||||  | ||  | |||||||| ||||| || ||||| || || ||||| |||||||| |||||||||||||| || |||| |      |  ||| | |      | || || | ||   | |     |  | ||      |  | | | ||     ||| || |    |         
CATAAGTATGCCAATGAAGATGTGTCTTTAGGGTCATGGTTTATCGGTCTTGAGGTTGAACATATTGATGACCGCAACTTCTGTTGTGGGACTCCTCCAGgtaaagctcaataacatcacacaaagcaatcttcctcttatctctct---tgcttctaatggttatgttccattggattcacatactcacag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352764403|gb|FQ472760.1|FQ472760
EST:     CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTG                         ATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
genomic: CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTGgtacacggtt ... gttgtttcagATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
EST: gi|110703923|gb|EE081283.1|EE081283
EST:     CGAAGTTGAGCACGTAGATGATCGCAACTTATGTTGTGGGACTCCACCTG                         ATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
genomic: CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTGgtacacggtt ... gttgtttcagATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
EST: gi|30128224|gb|CB913563.1|CB913563
EST:     CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTG                         ATTGCGAGTGGAA
genomic: CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTGgtacacggtt ... gttgtttcagATTGCGAGTGGAA
EST: gi|32267576|gb|CD716539.1|CD716539
EST:     CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTG                         ATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
genomic: CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTGgtacacggtt ... gttgtttcagATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
EST: gi|18459326|gb|BM437604.1|BM437604
EST:     CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTG                         ATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
genomic: CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTGgtacacggtt ... gttgtttcagATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
EST: gi|37187390|gb|CF606743.1|CF606743
EST:     CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTG                         ATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
genomic: CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTGgtacacggtt ... gttgtttcagATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
EST: gi|71887195|gb|DT036250.1|DT036250
EST:     CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTG                         ATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
genomic: CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTGgtacacggtt ... gttgtttcagATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
EST: gi|30326867|gb|CD010129.1|CD010129
EST:     CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTG                         ATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
genomic: CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTGgtacacggtt ... gttgtttcagATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
EST: gi|22015488|gb|BQ800522.1|BQ800522
EST:     CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTG                         ATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
genomic: CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTGgtacacggtt ... gttgtttcagATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
EST: gi|110413181|gb|EC978958.1|EC978958
EST:     CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTG                         ATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
genomic: CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTGgtacacggtt ... gttgtttcagATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
EST: gi|110361463|gb|EC924936.1|EC924936
EST:     CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTG                         ATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
genomic: CGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGACTCCACCTGgtacacggtt ... gttgtttcagATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
EST: gi|110693080|gb|EE068996.1|EE068996
EST:     CATAGATGATCGCAACTTATGTTGTGGGACTCCACCTG                         ATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT
genomic: CATAGATGATCGCAACTTATGTTGTGGGACTCCACCTGgtacacggtt ... gttgtttcagATTGCGAGTGGAAGGCACAGGCTGGTAATGTCTGTGTAGCATCATTTGATT