Sequence
atgc intronic sequence ATGC exonic sequenceCTAACCATCACAGAAATCAAAGCTGAGATGGAGAAAACATTGCAGTGGCTTGTTCCAATTGCCACAAACACAGCCAAgtgagaactcatccttttctgtgaacagccatattccattcttctctgcagttgttttcacatacttggttcattacctctccttttcattgataatcactttttttttttcttttggttgccaatggtttaaatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G00670.1 (Glycine max), 5'ss of exon 10
CTAACCATCACAGAAATCAAAGCTGAGATGGAGAAAACATTGCAGTGGCTTGTTCCAATTGCCACAAACACAGCCAAgtgagaactcatccttttctgtgaacagccatattccattcttctctgcagttgttttcacatacttggttcattacctctccttttcattgataatca--------ctttttttttttcttttggttgccaatggtttaaatcag
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CTCACCATATCAGATATTAAACAAGAGATGGAGAAAACATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAAgtaaga---tgtcctgctccgt--acttcctttttgagaattttttttctgatgaataagaaattttcttttagtaccagttcatttagtttctatacaaactaaaccgtttgttcttttggttggttactctaaaattgactcag
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA05G33040.1 (Glycine max), 5'ss of exon 10
CTAACCATCACAGAAATCAAAGCTGAGATGGAGAAAACATTGCAGTGGCTTGTTCCAATTGCCACAAACACAGCCAAgtgagaactcatccttttctgtgaacagccatattccattcttctctgcagttgt----tttcacatacttggttcattacctctccttttcattgataatcacttttt-ttttttcttttggttgccaatggtttaaatcag
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CTCACCATATCAAATATTAAAGAAGAGATGGAGAAAACATTGCATTGGCTGGTTCTGATTGCTACAAACACGGCCAAgtaaga---tgtctagctctgt-actacctttttgagatttttttgtcgaataataagatttttttttttagtactagttcatttactttctatataaactaaccgtttgttctcttggttggttactctaaaattgactcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30134360|gb|CB919698.1|CB919698EST: ATGGAGAAAACATTGCAGTGGCTTGTTCCAATTGCCACAAACACAGCCAA AGCCCATCACGGCTTTGGTTGGGTTGGAGAGTGGGCAGGCACAGG
genomic: ATGGAGAAAACATTGCAGTGGCTTGTTCCAATTGCCACAAACACAGCCAAgtgagaactc ... tttaaatcagAGCCCATCACGGCTTTGGTTGGGTTGGAGAGTGGGCAGGCACAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTAACCATCACAGAAATCAAAGCTGAGATGGAGAAAACATTGCAGTGGCTTGTTCCAATTGCCACAAACACAGCCAAgtgagaactcatccttttctgtgaacagccatattccattcttctctgcagttgttttcacatacttggttcattacctctccttttcattgataatcactttttttttttcttttggttgccaatggtttaaatcag
- - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - GGAGAA