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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTCTTTTGCTGATCCTGTTGCTGTAAGGCATGCTTTGGAAATTCTCTCCGAATTAGCTACAAAAGACCCTTATGCAGTTGCAATGGCCTTAGgtgatttaattaatttcacattttcactcttgacatcccattatgtttgcatgcacagaatgtgtgatatgcacacctctgcatggtctctacaagcatt...

Basic information

species Vitis vinifera
transcript Vv07s0031g02090.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA05G36530.1 (Glycine max), 5'ss of exon 9
GGTTTCTTTTGCTGATCCTGTTGCTGTAAGGCATGCTTTGGAAATTCTCTCCGAATTAGCTACAAAAGACCCTTATGCAGTTGCAATGGCCTTAGgtga----------tttaattaatttcacattttcac----tcttgacatcccattatgtttgcatgcacagaatgtgtgatatgcacacctctgcatggtctctacaagcatt
| |||| ||||||||||| |||||||| ||||||||  |||||||| | || ||  |||||||||  || |||||||| |||||||||||||||||| |           ||||| |||||  ||||   |     |       |  ||||   | | | |    |  | ||||   |  || |  ||| ||   |             
GATTTCATTTGCTGATCCAGTTGCTGTGAGGCATGCACTGGAAATTGTTTCTGAGATAGCTACAATGGATCCTTATGCTGTTGCAATGGCCTTAGgtaacagtgtacatcttaataaattttccattcaaatggtgttcaagtgtttcattgcatattcttttgtaata-gtgttggaaacaaatttctccaaaat-------------

upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G03020.1 (Glycine max), 5'ss of exon 9
GGTTTCTTTTGCTGATCCTGTTGCTGTAAGGCATGCTTTGGAAATTCTCTCCGAATTAGCTACAAAAGACCCTTATGCAGTTGCAATGGCCTTAGgtgatttaattaatttca-cattttcactcttgacatcccatt---atgtttgcatgcacagaatgtg-tgatatgcacacctctgcatggtctctacaagcatt
| |||| ||||||||||| |||||||| ||||||||  |||||||| | || ||  |||||||||  || |||||||| |||||||||||||||||| |     |  || | |  |  ||   | || | ||    ||    |||||   |||| |   | |  | ||||           ||   | ||| |||     
GATTTCATTTGCTGATCCAGTTGCTGTGAGGCATGCACTGGAAATTGTTTCTGAGATAGCTACAAGGGATCCTTATGCTGTTGCAATGGCCTTAGgtaacagtgtacatcttaataaattttttattaaaatggtgttctagtgtttcattgcatattctttcctaatatagtgttggaaaca-aatttctccaaa----

upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT2G07360.1 (Arabidopsis thaliana), 5'ss of exon 9
GGTTTCTTTTGCTGATCCTGTTGCTGTAAGGCATGCTTTGGAAATTCTCTCCGAATTAGCTACAAAAGACCCTTATGCAGTTGCAATGGCCTTAGgtga----tttaattaatttcacatttt--cactcttgacatcccatta-tgtttgcatgcacagaa-tgtgtgatatgcacacctctgcatg-gtctctacaagcatt--------
 ||||  ||||||||||||||||| || |||||| |  |||||||||| || || ||||| |||| |||||| ||| |||| |||||| | |||||| |    |||  |  ||| | | || |     | ||  ||| | |||  ||| || |   ||| || ||| |   || || | ||    ||| ||||||  |    ||        
TGTTTTCTTTGCTGATCCTGTTGCGGTGAGGCATTCACTGGAAATTCTATCTGAGTTAGCCACAAGAGACCCCTATACAGTAGCAATGACATTAGgtaaataatttgttctattcccccttatattgtttttttcattctatttctgtgtgtagagacataactgtttttcattcaaaacttgatatgtgtctcttgatctttttgctgcag