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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATTGGGTAAGAGAGTTTGCTATGTCCAGTTTCCCCAAAGATTTGATGGGATCGATCGTCATGATAGATACTCAAATCGAAATATCGTCTTCTTTGATgtatgtatacctttttcttttcttttttttccctttattgtttcttatatcattgggaaagctgatttttcaattgaaacag

Basic information

species Vitis vinifera
transcript Vv07s0031g02060.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 10
CTCATTGGGTAAGAGAGTTTGCTATGTCCAGTTTCCCCAAAGATTTGATGGGATCGATCGTCATGATAGATACTCAAATCGAAATATCGTCTTCTTTGATgtatgtataccttt------ttcttttcttttttttccctttattgtttcttatatcattgggaaagc---tgatttttcaattgaaa-cag
   | | || || |  ||||||||||| || ||||| || ||||||||||| || ||| | ||||||||||| |||||  ||||| | || || || |||||| || | |  ||      |||||| ||| |||  |   || |  |||  |   | | |  |  |||   | | |   ||||||||| |||
TCAACTTGGGAAAAAGGTTTGCTATGTGCAATTTCCTCAGAGATTTGATGGAATTGATAGACATGATAGATATTCAAACAGAAATGTGGTATTTTTCGATgtaagttttctcttccaattttctttgcttgtttgactgcttttcttttggttctttagtatggcagcttctaactccccaattgaaaacag

upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT4G39350.1 (Arabidopsis thaliana), 5'ss of exon 9
CTCATTGGGTAAGAGAGTTTGCTATGTCCAGTTTCCCCAAAGATTTGATGGGATCGATCGTCATGATAGATACTCAAATCGAAATATCGTCTTCTTTGATgtatgtatacctttttcttttcttttttttccctttat---------tgtttcttatatcattgggaaagctgatttttcaattgaaacag
   || ||| |||| |||||| ||||| |||||||| || |||||||||||||| ||| | ||||||||||||||||| || ||  | || ||||||||||||||| | | | | ||||||  ||| ||||  |||||           |||| | | |  |      |  |  ||||    | |||||||
GCAATCGGGAAAGAAAGTTTGTTATGTTCAGTTTCCGCAGAGATTTGATGGGATTGATAGACATGATAGATACTCAAACCGTAACGTTGTGTTCTTTGATgtatgtgtccttatctcttttgctttgtttctgtttatgttttagtgcttttcctcttttctcatttgatattgttttggtgtggaaacag

upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT2G21770.1 (Arabidopsis thaliana), 5'ss of exon 9
CTCATTGGGTAAGAGAGTTTGCTATGTCCAGTTTCCCCAAAGATTTGATGGGATCGATCGTCATGATAGATACTCAAATCGAAATATCGTCTTCTTTGATgtatgtatacctttttcttttcttttttttccctttattgtttcttata---tcattgggaaagctgatttttcaattg-aaacag
    |  || |||| | | || ||||| |||||||| || || ||||||||||| ||| | || ||| ||||||||||||| ||| | || ||||| ||||||||  | || |    |||   |||   |   | |||| | | ||| |    | ||   |  | ||  | |   |||  ||||||
GCAGTCCGGAAAGAAAATATGTTATGTTCAGTTTCCTCAGAGGTTTGATGGGATTGATAGACACGATCGATACTCAAATCGCAATGTGGTTTTCTTCGATgtatgatttccatggaatttgtctttgcgttgttctatt-tatgttacagctcccttctcattggtgtctctatgattataaacag

upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT5G64740.1 (Arabidopsis thaliana), 5'ss of exon 9
CTCATTGGGTAAGAGAGTTTGCTATGTCCAGTTTCCCCAAAGATTTGATGGGATCGATCGTCATGATAGATACTCAAATCGAAATATCGTCTTCTTTGATgtatgtatacctttttcttttcttttttttccctttattgt----ttcttatatcattgggaaagctgatttttcaattgaaacag
    |  || |||| | | || ||||| ||||| || ||||| || |||||||| ||| | || ||| ||||||||||||| ||| | || |||||||||||| ||| | |     |||| || || | ||||||| |  |    ||  | ||  ||    |    ||| | || | ||  |    
TCAGTCAGGAAAGAAAATCTGTTATGTTCAGTTCCCTCAAAGGTTCGATGGGATTGATAGGCACGATCGATACTCAAATCGCAATGTTGTGTTCTTTGATgtaagtacagccaccactttcctattgtatccctttttcttgagatttctgtagaataccaactaatgaatctttatttacag---