1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCAACAACTATTGGAGGCCCCTTAAAACAACAGGGGGAAAAGAAGGAAAGACCCCAAGAACGGCTCAAAAGGATCATGAGCAAGCAGCTAAACAAACAAAgtattcactaaatcatttgtattttcatgtcgatggatttaatccagtgacttgggtttccatatggtattggagagagatgggaacaaagaattttttg...
species | Vitis vinifera |
transcript | Vv07s0031g00640.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ACCCCAAGAACGGCTCAAAAGGATCATGAGCAAGCAGCTAAACAGACAAA TAAAAAAGGATACTGCAGTTGAAATGGCTAAGAAACGAGAACAGGAGCGCCEST: gi|30130748|gb|CB916087.1|CB916087
genomic: ACCCCAAGAACGGCTCAAAAGGATCATGAGCAAGCAGCTAAACAAACAAAgtattcacta ... tcttttacagTAAAAAAGGATACTGCAGTTGAAATGGCTAAGAAACGAGAACAGGAGCGCC
EST: ACCCCAAGAACGGCTCAAAAGGATCATGAGCAAGCAGCTAAACAAACAAA TAAAAAAGGATACTGCAGTTGAAATGGCTAAGAAACGAGAACAGGAGCGCC
genomic: ACCCCAAGAACGGCTCAAAAGGATCATGAGCAAGCAGCTAAACAAACAAAgtattcacta ... tcttttacagTAAAAAAGGATACTGCAGTTGAAATGGCTAAGAAACGAGAACAGGAGCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAACAACTATTGGAGGCCCCTTAAAACAACAGGGGGAAAAGAAGGAAAGACCCCAAGAACGGCTCAAAAGGATCATGAGCAAGCAGCTAAACAAACAAAgtattcactaaatcatttgtattttcatgtcgatggatttaatccagtgacttgggtttccatatggtattggagagagatgggaacaaagaattttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaaa