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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGATATGGTGCATACAATGCTTATATCACTGCAGCAACTAGATATGCTGCACTAGGTGCTCCTACCTTGTATGACCATCCAGGCTCAGTTTATGGAAgtaagcatcttctcaagtatgcacgtggagttttgcactgtttatcaacacaattatttctttgtttttaattctgttgcatgttggttag

Basic information

species Vitis vinifera
transcript Vv07s0031g00600.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os01g71770.1 (Oryza sativa), 5'ss of exon 10
GGTGGATATGGTGCATACAATGCTTATATCACTGCAGCAACTAGATATGCTGCACTAGGTGCTCCTACCTTGTATGACCATCCAGGCTCAGTTTATGGAAgtaagcatcttctcaagtatgcacgtggagttttgcactgtttatcaacac-aattatttctttgtttttaattctgttgcatgttggttag
||||| ||||||||||| ||||| || ||  | ||||| || |||||||| ||  | ||||| |||||  |||||||||||||||| |||| |||||||||||||  ||||||         |      ||||  |||     | |      || |  ||   ||||||  |||    |  |  |||  |||
GGTGGCTATGGTGCATATAATGCATACATTTCAGCAGCTACCAGATATGCAGCTTTGGGTGCACCTACTCTGTATGACCATCCAGGGTCAGCTTATGGAAgtaag--tcttctgctacgaagatcacaggtttgacacaaagcaactttgttaactggttaaatgttttctatttgact-tacattgactag

upper sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G05940.1 (Glycine max), 5'ss of exon 10
GGTGGATATGGTGCATACAATGCTTATATCACTGCAGCAACTAGATATGCTGCACTAGGTGCTCCTACCTTGTATGACCATCCAGGCTCAGTTTATGGAAgtaagcatctt-ctcaagtatgcacgtggagttttgcactgtttatcaacacaattatttctttgtttttaattctgttgcatgttggttag
|| ||||||||||||||||||||||||||| | ||||| ||||||||||| ||||| ||||||||||| |||||||||||||| ||| || ||||||||||||||||||   | | ||| | ||  |  | |    || ||||  |  | ||  | | |  |   |     ||| |||    |         
GGAGGATATGGTGCATACAATGCTTATATCTCAGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAAgtaagcatcaagcaccagtgttcaattaaaatgactca-tgttgcttcatac--tgactagtgactaccctattttgtgaattag-------

upper sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA01G39330.1 (Glycine max), 5'ss of exon 10
GGTGGATATGGTGCATACAATGCTTATATCACTGCAGCAACTAGATATGCTGCACTAGGTGCTCCTACCTTGTATGACCATCCAGGCTCAGTTTATGGAAgtaagcatctt-ctcaagtatgcacgtggagttttgcactgtttatcaacacaattatttctttgtttttaattctgttgcatgttggttag
|| |||||||| |||||||||||||||||  | ||||| ||||||||||| ||||| ||||||||||| ||||||||||| || ||| || ||||||||||||||||||   | | ||| | ||  |  |||   |   | | |  || || | | | |  |   |     ||| |||    |         
GGAGGATATGGCGCATACAATGCTTATATTTCAGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCAACCTGGCCCAATTTATGGAAgtaagcatcaagcaccagtgttcaattaaagt---gacttatgttgcatcatattgactagtgactaccctattttgtgaattag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415764|gb|EC981696.1|EC981696
EST:     TGCACTAGGTGCTCCTACCTTGTATGACCATCCAGGCTCAGTTTATGGAA                         GAGGGGAATCTACTCGTGCAATGGGCAAAAAGATTTTTGTTGGAAGGCTTC
genomic: TGCACTAGGTGCTCCTACCTTGTATGACCATCCAGGCTCAGTTTATGGAAgtaagcatct ... tgttggttagGAGGGGAATCTACTCGTGCAATGGGCAAAAAGATTTTTGTTGGAAGGCTTC
EST: gi|349818091|gb|FQ408866.1|FQ408866
EST:     TGCACTAGGTGCTCCTACCTTGTATGATCATCCAGGCTCAGTTTATGGAA                         GAGGGGAATCTACTCGTGCAATGGGCAAAAAGATTTTTGTTGGAAGGCTTC
genomic: TGCACTAGGTGCTCCTACCTTGTATGACCATCCAGGCTCAGTTTATGGAAgtaagcatct ... tgttggttagGAGGGGAATCTACTCGTGCAATGGGCAAAAAGATTTTTGTTGGAAGGCTTC
EST: gi|110429617|gb|EC996114.1|EC996114
EST:     TGCACTAGGTGCTCCTACCTTGTATGACCATCCAGGCTCAGTTTATGGAA                         GAGGGGAATCTACTCGTGCAATGGGCAAAAAGATTTTTGTTGGAAGGCTTC
genomic: TGCACTAGGTGCTCCTACCTTGTATGACCATCCAGGCTCAGTTTATGGAAgtaagcatct ... tgttggttagGAGGGGAATCTACTCGTGCAATGGGCAAAAAGATTTTTGTTGGAAGGCTTC
EST: gi|30129481|gb|CB914820.1|CB914820
EST:     TGCACTAGGTGCTCCTACCTTGTATGACCATCCAGGCTCAGTTTATGGAA                         GAGGGGAATCTACTCGTGCAATGGGCAAAAAGATTTTTGTTGGAAGGCTTC
genomic: TGCACTAGGTGCTCCTACCTTGTATGACCATCCAGGCTCAGTTTATGGAAgtaagcatct ... tgttggttagGAGGGGAATCTACTCGTGCAATGGGCAAAAAGATTTTTGTTGGAAGGCTTC
EST: gi|351020076|gb|FQ445683.1|FQ445683
EST:     TGCACTAGGTGCTCCTACCTTGTATGATCATCCAGGCTCAGTTTATGGAA                         GAGGGGAATCTACTCGTGCAATGGGCAAAAAGATTTTTGTTGGAAGGCTTC
genomic: TGCACTAGGTGCTCCTACCTTGTATGACCATCCAGGCTCAGTTTATGGAAgtaagcatct ... tgttggttagGAGGGGAATCTACTCGTGCAATGGGCAAAAAGATTTTTGTTGGAAGGCTTC
EST: gi|349811719|gb|FQ409716.1|FQ409716
EST:     TGCACTAGGTGCTCCTACCTTGTATGATCATCCAGGCTCAGTTTATGGAA                         GAGGGGAATCTACTCGTGCAATGGGCAAAAAGATTTTTGTTGGAAGGCTTC
genomic: TGCACTAGGTGCTCCTACCTTGTATGACCATCCAGGCTCAGTTTATGGAAgtaagcatct ... tgttggttagGAGGGGAATCTACTCGTGCAATGGGCAAAAAGATTTTTGTTGGAAGGCTTC
EST: gi|349818104|gb|FQ408879.1|FQ408879
EST:     TGCACTAGGTGCTCCTACCTTGTATGATCATCCAGGCTCAGTTTATGGAA                         GAGGGGAATCTACTCGTGCAATGGGCAAAAAGATTTTTGTTGGAAGGCTTC
genomic: TGCACTAGGTGCTCCTACCTTGTATGACCATCCAGGCTCAGTTTATGGAAgtaagcatct ... tgttggttagGAGGGGAATCTACTCGTGCAATGGGCAAAAAGATTTTTGTTGGAAGGCTTC