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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGCAAGCAGAAAGTTACTGCCATTGAAAGCATGCTTAGAGGTTTGGAATTATCTGACAAGCATAATTCAAGTCTCCGATCATCTAGTTTGGATCTAGgtattgaatggttttgtcaattagattattatctttgatcataatattaatttgactgtcaatctatgaagctattcaatggtttactgttgaatcactatctgattgaccaatggtcaaaacgaagctgtctttaatgtttgaacaatttatgaacggctaagtttttctcttattgcccctagcgcag

Basic information

species Vitis vinifera
transcript Vv07s0005g05030.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA19G35460.1 (Glycine max), 5'ss of exon 13
GCAAGCAAGCAGAAAGTTACTGCCATTGAAAGCATGCTTAGAGGTTTGGAATTATCTGACAAGCATAATTCAAG---TCTCCGATCATCTAGTTTGGATCTAGgtattgaatggttttgtcaattagattattatctttgatcataatattaatttgactgtcaatctatgaagctattcaatggtttactgttgaatcactatctgattgaccaatggtcaaaacgaagctgtctttaatgtttgaacaatttatgaacggctaagtttttctcttattgcccctagcgcag
   ||||| ||||| ||| |||| |||||||||||||||||||| ||||| || ||||| ||||||||||||     |||||| ||| | ||||||||||||||||    ||   |||  |  ||||    |||| |||  |  ||   | |||||     |||      || |  ||||||||||| |              |||| | |                    ||| |||     || ||| ||||  || ||| ||| ||||||||||||||||||||| ||||
---AGCAAACAGAAGGTTTCTGCTATTGAAAGCATGCTTAGAGGCTTGGATTTGTCTGATAAGCATAATTCATCTTCTCTCCGGTCAACAAGTTTGGATCTAGgtaccacataagttttcctgttag----ttatttttatttgtacc-tcaattt-----tcaggactagatgtcattcaatggttga--------------tctgttag--------------------tgttttt-----ttaaactattt--gagcggttaaatttttctcttattgcccctagtgcag

upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA03G32710.1 (Glycine max), 5'ss of exon 13
GCAAGCAAGCAGAAAGTTACTGCCATTGAAAGCATGCTTAGAGGTTTGGAATTATCTGACAAGCATAATTCAAG---TCTCCGATCATCTAGTTTGGATCTAGgtattgaatggttttgtcaattagattattatctttgatcataatattaatttgactgtcaatctatgaagctattcaatggtttactgttgaatcactatctgattgaccaatggtcaaaacgaagctgtctttaatgtttgaacaatttatgaacggctaagtttttctcttattgcccctagcgcag
   ||||| ||||| ||| |||| |||||||||||||||||||| ||||| || ||||| ||||||||||||     |||||| ||| | ||||||||||||||||    ||   |||  |  ||| ||  || | |||          |||  |  | | |||     ||| || ||||||||||| |              |||| | |                    ||| |||     |  ||| ||||  || ||||||| ||||||||||||||||||||| ||||
---AGCAAACAGAAGGTTTCTGCTATTGAAAGCATGCTTAGAGGCTTGGATTTGTCTGATAAGCATAATTCATCTTCTCTCCGGTCAACAAGTTTGGATCTAGgtacaacataagttttcctgttatatatttttattt----------ttacctcaattttcaggacttgatgccattcaatggttga--------------tctgttag--------------------tgttttt-----tcaaactattt--gagcggctaaatttttctcttattgcccctagtgcag

upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA03G32710.1 (Glycine max), 5'ss of exon 13
GCAAGCAAGCAGAAAGTTACTGCCATTGAAAGCATGCTTAGAGGTTTGGAATTATCTGACAAGCATAATTCAAG---TCTCCGATCATCTAGTTTGGATCTAGgtattgaatggttttgtcaattagattattatctttgatcataatattaatttgactgtcaatctatgaagctattcaatggtttactgttgaatcactatctgattgaccaatggtcaaaacgaagctgtctttaatgtttgaacaatttatgaacggctaagtttttctcttattgcccctagcgcag
   ||||| ||||| ||| |||| |||||||||||||||||||| ||||| || ||||| ||||||||||||     |||||| ||| | ||||||||||||||||    ||   |||  |  ||| ||  || | |||          |||  |  | | |||     ||| || ||||||||||| |              |||| | |                    ||| |||     |  ||| ||||  || ||||||| ||||||||||||||||||||| ||||
---AGCAAACAGAAGGTTTCTGCTATTGAAAGCATGCTTAGAGGCTTGGATTTGTCTGATAAGCATAATTCATCTTCTCTCCGGTCAACAAGTTTGGATCTAGgtacaacataagttttcctgttatatatttttattt----------ttacctcaattttcaggacttgatgccattcaatggttga--------------tctgttag--------------------tgttttt-----tcaaactattt--gagcggctaaatttttctcttattgcccctagtgcag

upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G19230.1 (Glycine max), 5'ss of exon 13
GCAAGCAAGCAGAAAGTTACTGCCATTGAAAGCATGCTTAGAGGTTTGGAATTATCTGACAAGCATAATTCA---AGTCTCCGATCATCTAGTTTGGATCTAGgtattgaatggttttgtcaattagattattatctttgatcataatattaatttgactgtcaatctatgaagctattcaatggtttactgttgaatcactatctgattgaccaatggtcaaaacgaagctgtctttaatgtttgaacaatttatgaacggctaagtttttctcttattgcccctagcgcag
   ||||| ||||| || ||||| ||||||||||||||||| |||||||| || ||||| ||||||  ||||     |||||| ||||| || |||| ||||||||   |||   |||     ||| ||   ||| |||  ||    ||  |  |||  | |  |  | |   || ||||||   ||                                     | ||||||     ||  ||||  | | ||| ||| ||||||| ||| ||||||||||||||||| ||||
---AGCAAACAGAAGGTCACTGCTATTGAAAGCATGCTTAGGGGTTTGGATTTGTCTGATAAGCATGGTTCATCTGCTCTCCGGTCATCGAGCTTGGGTCTAGgtaccaaataagtttacttgttaaatatatatattttttc----taccacattg-ttctggacttgtt--gccattcaacaatt------------------------------------gatgaagctagtgatatggtttttaaactttgtgagcggctaaatttatctcttattgcccctagtgcag

upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G04850.1 (Glycine max), 5'ss of exon 13
GCAAGCAAGCAGAAAGTTACTGCCATTGAAAGCATGCTTAGAGGTTTGGAATTATCTGACAAGCATAATTCA---AGTCTCCGATCATCTAGTTTGGATCTAGgtattgaatggttttgtcaattagattattatctttgatcataatattaatttgactgtcaatctatgaagctattcaatggtttactgttgaatcactatctgattgaccaatggtcaaaacgaagctgtctttaatgtttgaacaatttatgaacggctaagtttttctcttattgcccctagcgcag
   ||||| ||||| || ||||| ||||||||||||||||| |||||||| || | ||| ||||||  ||||     |||||| ||||| || |||||||||||||   |||   |||     ||| ||   ||| |||        | |  |  | | |||     | || |  | ||          |  || ||  | |             ||| |   |  ||    || |||||         | ||| ||| ||||||| ||| ||||||||||||||||| ||||
---AGCAAACAGAAGGTCACTGCTATTGAAAGCATGCTTAGGGGTTTGGATTTGTTTGATAAGCATGGTTCATCTGCTCTCCGGTCATCGAGCTTGGATCTAGgtaccaaataagtttacttgttaaatatatatattt--------tttctacctcattgt-----tctggacttgtt---------gccattcaacaattg------------atgatgctagtgatatggtttttaa---------actttgtgagcggctaaatttatctcttattgcccctagtgcag