Sequence
atgc intronic sequence ATGC exonic sequenceGCAGCAGTAATGTATGACACGATCCGTGAATGGCCTCGTTATGTGAAAGTGCCTTTCCCAATTGCAAAGgtaaaacaaatatgctgctgttgtccttttttccccttcccttttcttttgggtgttggtcgggttggtgattggaggtcattggacaatgggtttatct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g04440.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G18950.1 (Glycine max), 5'ss of exon 10
GCAGCAGTAATGTATGACACGATCCGTGAATGGCCTCGTTATGTGAAAGTGCCTTTCCCAATTGCAAAGgtaaaacaaatatgctgctgttgtccttttttccccttcccttttcttttgggtgttggtcgggttggtgattgg-aggtcattggac--aatgggtttatct-
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GCAGACGTTATGTTTGATACAATTCGAGAATGGCCTCGATATGTGAAGGTGCCTTTCCCCATTGCAAAGgtgtgttaagtgttaaccacttctaatttgttgatgtctacttaccattggaa----agccaagccagtaatgaacacacctttggtcttgtggggttaatatt
upper sequence: Vv07s0005g04440.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT2G20360.1 (Arabidopsis thaliana), 5'ss of exon 10
GCAGCAGTAATGTATGACACGATCCGTGAATGGCCTCGTTATGTGAAAGTGCCTTTCCCAATTGCAAAGgtaaaacaaatatgctgctgttgtccttttttccccttccctttt-cttttgggtgttggtcgggttggtgattggaggtcattggaca-atgggtttatct-------
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GCAGAGATCATGTATGATATGATTCGTGAATGGCCTCGGTATGTGAAGCTTCCGTTTCCAATTGCCAAGgtaaaagatcgaatcgtgcactgtccatggaagaaactccaaagaatttttgttttcctcttgaaatactg--taatactaatttcacatatgtcacaatctgttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110424142|gb|EC990498.1|EC990498EST: CAATCCGTGAATGGCCTCGTTATGTGAAAGTGCCTTTCCCAATTGCAAAG GCCATGACATT
genomic: CGATCCGTGAATGGCCTCGTTATGTGAAAGTGCCTTTCCCAATTGCAAAGgtaaaacaaa ... atgatttcagGCCATGACATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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GCAGCAGTAATGTATGACACGATCCGTGAATGGCCTCGTTATGTGAAAGTGCCTTTCCCAATTGCAAAGgtaaaacaaatatgctgctgttgtccttttttccccttcccttttcttttgggtgttggtcgggttggtgattggaggtcattggacaatgggtttatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttccc