Sequence
atgc intronic sequence ATGC exonic sequenceAGTTTACTAGCAAGATTGAGGGGAAGATGGGTTATGAAGATTTTGTTTACTTCATGCTGTCAGAGGAGGATAAGTCATCAGAGCCTGGTCTTGAATATTGgtataccttgctttttttttttttcctttttcttttaatcactttttatttttctactaagctgttgatttaattttagaagagctctttagtgattgca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g03730.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os10g33680.1 (Oryza sativa), 5'ss of exon 9
AGTTTACTAGCAAGATTGAGGGGAAGATGGGTTATGAAGATTTTGTTTACTTCATGCTGTCAGAGGAGGATAAGTCATCAGAGCCTGGTCTTGAATATTGgta--taccttgctttttttttttttcctttttcttttaatcactttttatttttctactaagctgttgatttaattttagaagagctctttagt-gattgca
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AATTCACAAGCATGACAGAAGGAAAGATGGGTTATGAAGATTTTGTTTACTTTATTTTGTCTGAGGAAGACAAATCATCCGAGCCTAGCCTTGAATACTGgtaagtatgttctattagcgtagataattgtccttggtaggcactcgtagtttttatcttcta-tatgcatttgtatattctgtctcacttagcttgatta--
upper sequence: Vv07s0005g03730.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G148323_T01 (Zea mays), 5'ss of exon 9
AGTTTACTAGCAAGATTGAGGGGAAGATGGGTTATGAAGATTTTGTTTACTTCATGCTGTCAGAGGAGGATAAGTCATCAGAGCCTGGTCTTGAATATTGgtatacctt-gctttttttt------tttttcctttttcttttaatcactttttatttttctactaagctgttgatttaattttagaagagctctttagtgattgca-
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AATTCACAAGCATGACAGAAGGAAAGATGGGTTATGAAGACTTTGTTTACTTTATATTATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATATTGgtaagtggtagctgtgttctgaatagttgtatgtattttttttgtagaactgttccttttttcttaatgtgataagataattcca--------ccttacagtttataa
upper sequence: Vv07s0005g03730.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT5G44090.1 (Arabidopsis thaliana), 5'ss of exon 9
AGTTTACTAGCAAGATTGAGGGGAAGATGGGTTATGAAGATTTTGTTTACTTCATGCTGTCAGAGGAGGATAAGTCATCAGAGCCTGGTCTTGAATATTGgtataccttgctttttttttttttcctttttcttttaatcactttttatttttctactaagctgttgatt--taattttagaagagctctttagtgattgca
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AATTTACAAGCAAAGTTGAGGGGAAGATGAGTTATGAAGATTTTGCATACTTTATTCTCGCTGAGGAGGATAAGTCATCTGAGCCTAGTCTTGAGTATTGgtacatgtctcttcccctcttctctttttgtcttt-agtgacttctctttagccattttgtcctttagctgcttagctcacagtatgtcacta-taaatgta
upper sequence: Vv07s0005g03730.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G03960.1 (Arabidopsis thaliana), 5'ss of exon 9
AGTTTACTAGCAAGATTGAGGGGAAGATGGGTTATGAAGATTTTGTTTACTTCATGCTGTCAGAGGAGGATAAGTCATCAGAGCCTGGTCTTGAATATTGgtataccttgctttttttttttttcctt---tttcttttaatcactttttatttttctactaagctgttgatttaattttagaagagctctttagtgattgca
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AGTTTACGAGTAAAGTTGAAGGGAAGATGAGTTATGAAGATTTTGTGTACTTCATTCTCGCTGAGGAAGACAAGTCTTCCGAGCCTAGTCTTGAGTATTGgtacacatctccccctccgtgttgatattggttttccttaatgaatgttgccccttggtttagatcacaagatc---ttgatatatatactacaacggagtcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161708749|gb|FC060060.1|FC060060EST: TTC-TGCTGTCAGAGGAGGATAAGTCATCAGAGCCTGGTCTTGAATATTG GTTCAAGTGCATAGATTTGGATGGAAATGGAGTGCTTACACTGAATGAAAT
genomic: TTCATGCTGTCAGAGGAGGATAAGTCATCAGAGCCTGGTCTTGAATATTGgtataccttg ... tattttccagGTTCAAGTGCATAGATTTGGATGGAAATGGAGTGCTTACACTGAATGAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTTTACTAGCAAGATTGAGGGGAAGATGGGTTATGAAGATTTTGTTTACTTCATGCTGTCAGAGGAGGATAAGTCATCAGAGCCTGGTCTTGAATATTGgtataccttgctttttttttttttcctttttcttttaatcactttttatttttctactaagctgttgatttaattttagaagagctctttagtgattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagaaga