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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAGATAACTATTCACCAGGTTGGAAGTATTCACATTGGGAAATGAAGGGTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAGgtatgggtaatccaattgctatttttatttcctttcaaccaatttgtttcttctttatattattgtgtctgttcagtactctatggtatttccatttcattgcttttacttatttactggaagaatgatatattttgttctatccacag

Basic information

species Vitis vinifera
transcript Vv07s0005g02620.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02620.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os12g25710.3 (Oryza sativa), 5'ss of exon 9
TAGAGATAACTATTCACCAGGTTGGAAGTATTCACATTGGGAAATGAAGGGTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAGgtatgggtaatccaattgctatttttatttcctttcaaccaatttgtttcttctttat-attattgtgtctgttcagtactctatggtatttccatttcattgcttttacttatttactggaagaatgatatattttgttctatccacag
  | || |||||||| ||||| ||||||||||| || ||||| ||||| || |||||||| ||||||||||| || ||||||||  | || ||||| ||||||  |    ||  |    |   ||||||  |||   |   ||  ||  |   || || | |||  ||  | |      ||  ||    |    | |  ||                                                 
CCGCGAAAACTATTCTCCAGGATGGAAGTATTCCCACTGGGAGATGAAAGGCGTTCCTCTAAGAATTGAGATAGGTCCAAAAGATATGGCAAACAATCAGgtacaga-ggtcacaccatttaatttattaacttc--attgatcagtggcacattaattactataatgcttctaggactcttcataaagtagttaatg-ataaa----------------------------------------------

upper sequence: Vv07s0005g02620.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G094123_T01 (Zea mays), 5'ss of exon 9
TAGAGATAACTATTCACCAGGTTGGAAGTATTCACATTGGGAAATGAAGGGTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAGgta--tgggtaatccaattgcta-tttttatttcctttcaaccaatttgtttcttctttatattattgtgtctgttcagtactctatggtatttccatttcattgcttttacttatttactggaagaatgatatattttgttctatccacag
  | || || || || ||||||||||||||||| || ||||||||||| ||||||||  | |||||||||||||| ||||||||  | || ||||| ||||||  || ||| |    | || | |    |||    || ||  | |   |  | | ||| | |||     | | ||   || |   |  | |  |||  | |                                                  
CCGTGAAAATTACTCTCCAGGTTGGAAGTATTCCCACTGGGAAATGAAAGGTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagtattttcctcgcaaatcaccattcatgtttaa--attggatcacatttttttgttaactcttatcttttatattaattaatgtg-ccacatgaa-------------------------------------------------

upper sequence: Vv07s0005g02620.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA03G38340.1 (Glycine max), 5'ss of exon 10
TAGAGATAACTATTCACCAGGTTGGAAGTATTCACATTGGGAAATGAAGGGTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAGgtatgggtaatccaattgctatttttatttcctttcaaccaatttgtttcttctttatattattgtgtctgttcagtactctatggtatttccatttcattgcttttacttatttactggaagaatgatatattttgttctatccacag
||||||||| ||||| || || |||||||||||  ||||||||||||| ||||||||||| |||||||| ||||||||||| || ||||| || ||||||||     |||     |  ||| | ||   ||  |||  |  ||||||   ||   |     | |||        |||  |  |  | |  || | |  ||  ||||   || |  |  |                              
TAGAGATAATTATTCTCCTGGATGGAAGTATTCTAATTGGGAAATGAAAGGTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtc--attaactttgtc-ctagtgttgcatcaattct-cgtatttgtcattttgcttccacactgt-------tagtttttcagtgaacatcaaataaatctctttggattttgcatag------------------------------

upper sequence: Vv07s0005g02620.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA19G40930.4 (Glycine max), 5'ss of exon 10
TAGAGATAACTATTCACCAGGTTGGAAGTATTCACATTGGGAAATGAAGGGTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAGgtatgggtaatccaattgctatttttatttcctttcaaccaatttgtttcttctttatattattgtgtctgttcagtactctatggtatttccatttcattgc-ttttacttatttactggaagaatgatatattttgttctatccacag
||||||||| ||||| || || |||||||||||  | ||||||||||| || |||||||| |||||||| ||||||||||| || ||||| || ||||||||      ||         | |||| ||    | |||      |  |||    |  | | | ||  || | ||||||     |    |  |  || || |||  |||| | ||                                     
TAGAGATAATTATTCTCCTGGATGGAAGTATTCCAACTGGGAAATGAAAGGGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtc--atcaactttgccagtgtttt-atcaattctcatatttgtcattttgcttccacactgtta-gttt-ttcagtga---acaccaaataaatctctttgaattttgcatag------------------------------------

upper sequence: Vv07s0005g02620.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G62120.2 (Arabidopsis thaliana), 5'ss of exon 9
TAGAGATAACTATTCACCAGGTTGGAAGTATTCACATTGGGAAATGAAGGGTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAGgtatgggtaatccaattgctatttt-tatttcctttcaaccaatttgtttcttctttatattattgtgtctgttcagtactctatggtatttccatttcattgcttttacttatttactggaagaatgatatattttgttctatccacag
 || || ||||| || || || |||||||||||| | ||||||||||||||||||||  | || ||||||||||| || | |||| |||  ||  | |||||      | |||  ||  ||| |  |   | | ||| ||  || |  |  |    ||  |   ||  |    |  |||   | |  | |  | |    |  | ||| | ||||    | |                             
AAGGGACAACTACTCTCCTGGATGGAAGTATTCAGACTGGGAAATGAAGGGTGTTCCATTGAGGATTGAGATTGGTCCCAGAGACCTAGAAAATGATCAGgt-----cagtccgtttaatatctcatcaattccttcgac--atataatattgaagtaagtgcctggtttaaatatgtaacttgtaatgtagctaa---acggatttcatttatcccatag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349830341|gb|FQ420601.1|FQ420601
EST:     GTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAG                         GCGCGTGCTGTTCGCCGTGACAATTCAGCTAAAATCGATATTCCTATTGTC
genomic: GTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAGgtatgggtaa ... ctatccacagGCGCGTGCTGTTCGCCGTGACAATTCAGCTAAAATCGATATTCCTATTGTC
EST: gi|30306346|gb|CB983140.1|CB983140
EST:     GTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAG                         GCGCGTGCTGTTCGCCGTGACAATTCAGCTAAAATCGATATTCCTATTGTC
genomic: GTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAGgtatgggtaa ... ctatccacagGCGCGTGCTGTTCGCCGTGACAATTCAGCTAAAATCGATATTCCTATTGTC
EST: gi|110427116|gb|EC993547.1|EC993547
EST:     GTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAG                         GCGCGTGCTGTTCGCCGTGACAATTCAGCTAAAATCGATATTCCTATTGTC
genomic: GTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAGgtatgggtaa ... ctatccacagGCGCGTGCTGTTCGCCGTGACAATTCAGCTAAAATCGATATTCCTATTGTC
EST: gi|351025523|gb|FQ435216.1|FQ435216
EST:     GTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAG                         GCGCGTGCTGTTCGCCGTGACAATTCAGCTAAAATCGATATTCCTATTGTC
genomic: GTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAGgtatgggtaa ... ctatccacagGCGCGTGCTGTTCGCCGTGACAATTCAGCTAAAATCGATATTCCTATTGTC
EST: gi|26263859|gb|CA814922.1|CA814922
EST:     GTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAG                         GCGCGTGCTGTTCGCCGTGACAATTCAGCTAAAATCGATATTCCTATTGTC
genomic: GTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAGgtatgggtaa ... ctatccacagGCGCGTGCTGTTCGCCGTGACAATTCAGCTAAAATCGATATTCCTATTGTC
EST: gi|349826601|gb|FQ418692.1|FQ418692
EST:     GTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAG                         GCGCGTGCTGTTCGCCGTGACAATTCAGCTAAAATCGATATTCCTATTGTC
genomic: GTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAGgtatgggtaa ... ctatccacagGCGCGTGCTGTTCGCCGTGACAATTCAGCTAAAATCGATATTCCTATTGTC
EST: gi|110361565|gb|EC925047.1|EC925047
EST:     GTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAG                         GCGCGTGCTGTTCGCCGTGACAATTCAGCTAAAATCGATATTCCTATTGTC
genomic: GTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAGgtatgggtaa ... ctatccacagGCGCGTGCTGTTCGCCGTGACAATTCAGCTAAAATCGATATTCCTATTGTC
EST: gi|26265772|gb|CA816835.1|CA816835
EST:     GTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAG                         GCGCGTGCTGTTCGCCGTGACAATTCAGCTAAAATCGATATTCCTATTGTC
genomic: GTGTTCCTCTTAGAATTGAGATTGGGCCAAAAGACTTAGCTAACAAGCAGgtatgggtaa ... ctatccacagGCGCGTGCTGTTCGCCGTGACAATTCAGCTAAAATCGATATTCCTATTGTC