Sequence
atgc intronic sequence ATGC exonic sequenceAATGCACAAGACAGGTCGTCCAGTGCTTGTTGGCACCACAAGTGTTGAGCAAAGTGACTCATTGTCAGAACAGTTGAATGAAGCTGGAATTCCCCATGAGgtgaggtccataaattttttgtgggtgtatattcttttagttgggggaatgcagcaatggtagcatgcactataatcaacctctataggtgaagtatggt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os01g21820.1 (Oryza sativa), 5'ss of exon 8
AATGCACAAGACAGGTCGTCCAGTGCTTGTTGGCACCACAAGTGTTGAGCAAAGTGACTCATTGTCAGAACAGTTGAATGAAGCTGGAATTCCCCATGAGgtgag---gtcc---ataaattttttgtgggtgtatattcttttagttgggggaatgcagcaatggtagcatgcactataatcaacctctataggtgaagtatggt
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AATGAACAAAGTTGGTCGCCCTGTGCTTGTTGGTACAACTAGTGTTGAACAAAGTGAAACCTTATCAGAACAATTGCATGAAGCAGGGATTCCTCATGAGgtatgcctgttcctgttagcttcattaacagtaaatattcatct--ctgttggctttcaat--taaaagctggccctttggcctcttgtcttaaaaacagtaaa--
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA02G01060.2 (Glycine max), 5'ss of exon 10
AATGCACAAGACAGGTCGTCCAGTGCTTGTTGGCACCACAAGTGTTGAGCAAAGTGACTCATTGTCAGAACAGTTGAATGAAGCTGGAATTCCCCATGAGgtgaggtccataaattttttgtgggtgtatattcttttagttgggggaatgcagcaatggtagcatgcactataatcaacctctataggtgaagtatggt--
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GATGCACAAAACCGGTCGCCCGGTGCTTGTTGGCACCACTAGTGTTGAGCAGAGTGATTCTTTGTCAGAGCAATTGAAAGAAGCTGGAATTCCGCACGAGgtaaggtccctc--ttgcttcctatactactatacctcacaaaaacatattaagatgcgtcatttaaaaatgtaagcactttgtctcttttcagaaaaatcc
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G27810.1 (Glycine max), 5'ss of exon 10
AATGCACAAGACAGGTCGTCCAGTGCTTGTTGGCACCACAAGTGTTGAGCAAAGTGACTCATTGTCAGAACAGTTGAATGAAGCTGGAATTCCCCATGAGgtgaggtccataaattttttgtgggtgtatattcttttagt-tgggggaatgcagcaatggtagcatgcactataatcaacctctataggtgaagtatggt
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GATGCATAAAACCGGTCGCCCAGTGCTTGTTGGCACCACTAGTGTTGAGCAGAGTGATTCATTATCAGAGCAATTGAAAGAAGCTGGAATTCCGCACGAGgtaaggtccctcttgtcttcctacactaacctcatgaaaacatattaagatgcatcattaaaaaaatataa-gcactttgtctctttttgaaaaaatccacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110687042|gb|EE064104.1|EE064104EST: AAAGTGACTCATTGTCAGAACAGTTGAATGAAGCTGGAATTCCCCATGAG GTTCTCAATGCGAAACCAGAGAATGTAGAGAGAGAAGCAGAAATTGTTGCA
genomic: AAAGTGACTCATTGTCAGAACAGTTGAATGAAGCTGGAATTCCCCATGAGgtgaggtcca ... ttaattaaagGTTCTCAATGCGAAACCAGAGAATGTAGAGAGAGAAGCAGAAATTGTTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATGCACAAGACAGGTCGTCCAGTGCTTGTTGGCACCACAAGTGTTGAGCAAAGTGACTCATTGTCAGAACAGTTGAATGAAGCTGGAATTCCCCATGAGgtgaggtccataaattttttgtgggtgtatattcttttagttgggggaatgcagcaatggtagcatgcactataatcaacctctataggtgaagtatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggtgaag