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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGGGCACCCCAACAAGAGAGGAAATTAAGTGCATGAATCCCAATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggatagaagcaggatattacttcaattctgctatgcttcttacaacctcacgaatattgattttcattcttattgtacctcctatcag

Basic information

species Vitis vinifera
transcript Vv07s0005g02100.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os05g04340.1 (Oryza sativa), 5'ss of exon 10
GTTTTGGGCACCCCAACAAGAGAGGAAATTAAGTGCATGAATCCCAATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggatagaagcaggatattacttcaattctgctatgcttc----ttacaacctcacgaatattgattttcattcttattgtacctcctatcag
||| |||| ||||| ||| ||||||| |||||||||||||| || |||||||| || |||||||| || ||||| ||||| ||||||||||||||||||   || |  |     || ||       || |  | |  ||     ||  |||||    ||| | | ||| | || || ||  ||| ||      
GTTCTGGGTACCCCTACACGAGAGGAGATTAAGTGCATGAACCCAAATTACACCGAGTTTAAATTTCCGCAAATCAAAGCTCACCCATGGCACAAGgtagaagaaaataatcttatgttggactgtttattttttattttagggttgaaacct----aatgtagctttccttttttttt--accaccag----

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os01g19150.4 (Oryza sativa), 5'ss of exon 9
GTTTTGGGCACCCCAACAAGAGAGGAAATTAAGTGCATGAATCCCAATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactgg---atagaagcaggatattacttcaattct----gcta-tgcttcttacaacct---cacgaatattgattttcattcttattgtacctcctatcag-------------------------------------
||  |||| || |||||||| || ||||| ||    |||||||| || ||||| || ||||| ||||| ||||| ||||| ||||||||||||||||||   |     | |   |   | || ||   ||| |    | || ||  || | |   ||    |  |||  | || |  ||||| ||| | | | || |||                                      
GTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagccttcacatttattttgttcctcttattttcagagttaatgtctcctgcttactatttataaattataatgtgtattctaattatgcatactttcaccagatctttcataaaagaatgccatctgaagctgtag

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os01g19150.5 (Oryza sativa), 5'ss of exon 10
GTTTTGGGCACCCCAACAAGAGAGGAAATTAAGTGCATGAATCCCAATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactgga---tagaagcaggatattacttcaattct----gcta-tgcttcttacaacct---cacgaatattgattttcattcttattgtacctcctatcag---
||  |||| || |||||||| || ||||| ||    |||||||| || ||||| || ||||| ||||| ||||| ||||| ||||||||||||||||||   |     | |   |   | || ||   ||| |    | || ||  || | |   ||    |  |||  | || |  ||||| ||| | | | || |||    
GTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAGgtaggagccttcacatttattttgttcctcttattttcagagttaatgtctcctgcttactatttataaattataatgtgtattctaattatgcatactttcaccag

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G155836_T01 (Zea mays), 5'ss of exon 10
GTTTTGGGCACCCCAACAAGAGAGGAAATTAAGTGCATGAATCCCAATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggatagaagcaggatattacttcaattctgctatgcttcttacaacctcacgaatattgattttcattcttattgtacctcc-tatcag
||| ||||||| || ||| | || |||||||||||||||||||| ||||| || || ||||||||||| ||||| ||||| ||||||||||| ||||||  |  |       ||||  |    |   ||| |  ||   || ||  |  ||| ||  ||||  |      ||  |||   ||  |   ||
GTTCTGGGCACACCCACACGTGAAGAAATTAAGTGCATGAATCCAAATTATACCGAGTTTAAATTCCCGCAAATCAAAGCTCACCCATGGCATAAGgtagggattttgtattggattgtgtgccctctcttcc-tgtccctaac--ctccaccaaggttgacatcttccattgatgtctttctgtgctag

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G01280.2 (Glycine max), 5'ss of exon 10
GTTTTGGGCACCCCAACAAGAGAGGAAATTAAGTGCATGAATCCCAATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggatagaagca---ggatattacttcaattctgctatgcttcttacaacctcacgaatattgattttcattcttattgtacctcctatcag
||||| || ||||||||||| || ||||| |||||||||||||| ||||| || || |  ||||| |||||||||||||| |||||||||||||||||| |  |  |        | || |   || |  | |  | |  || | | |  |  |   ||||  |  |||||  | |                
GTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAGgtattataatgttatttttgcatgtctatttacatgttatttcattatgatattcatatatatatgaaccttcatcttcag---------------

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA02G01220.2 (Glycine max), 5'ss of exon 10
GTTTTGGGCACCCCAACAAGAGAGGAAATTAAGTGCATGAATCCCAATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggatagaagcaggatattacttcaattctgctatgcttc-ttacaac-ctcacgaatattgattttcattcttattgtacctcctatcag
||||| || ||||| ||||| || ||||| ||||| |||||||| |||||||| || || ||||| |||||||||||||| || |||||||| |||||| || |  |    |   |     | || || ||  ||  ||| ||   |   |||   ||||  |  |||||| | |                
GTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaatgttatatt-tgcctgtccatttatgtgatatttcattgtgatattcatatatatgaaccttcattatcag---------------

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
GTTTTGGGCACCCCAACAAGAGAGGAAATTAAGTGCATGAATCCCAATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggatagaagcaggatattacttcaattctgctatgcttcttacaacctcacgaatattgattttcattcttattgtacctcctatcag---------------------------------------------------------------------------------------------------
|| || || || || ||| | ||||| || |||||||||||||| || ||||| || || || || || |||||||| || ||||| ||||||||||||  |  |  | |   |   |||  |   ||  |   |   |  || ||  | |     ||| ||     | ||   | |   |  | |                                                                                                      
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgg-gttagctatttttagtggtctattatataatttgataggaatt-atccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
GTTTTGGGCACCCCAACAAGAGAGGAAATTAAGTGCATGAATCCCAATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtac--tggatagaagcaggatattacttcaattc---tgctatgcttcttacaacctcacgaatattgattttcattcttattgtacctcc--tatcag--------------------------------------------------------------------------------
|||||||| || || ||  | ||||| || |||||||||||||| || |||||||| || || || |||||||| || || ||||| |||||||| |||   |   |    | | | ||| |  |||       || |  | || |       |   | || | | |   | ||  |  |||| |  |  | | ||                                                                                
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttttttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 10
GTTTTGGGCACCCCAACAAGAGAGGAAATTAAGTGCATGAATCCCAATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggatagaagcaggatattacttcaattctgctatgcttcttacaacctcacgaatattgattttcattcttattgtacctcctatcag
|| || || || || ||  | |||||||| || ||||||||||| || ||||| || ||||| ||||| || |||||||| || || ||||||||||||  |   |       | |||  ||     ||||     |||  |    | ||    | |                                
GTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaa-gagcaatcatccggtatatctctctctctgtctctcttgatgtggc-tcgttgacag-------------------------------

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 10
GTTTTGGGCACCCCAACAAGAGAGGAAATTAAGTGCATGAATCCCAATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggatagaagcaggatattacttcaattctgctatgcttcttacaacctcacgaatattgattttcattcttattgtacctcctatcag
|| || || || || ||  | |||||||| || ||||||||||| || ||||| || ||||| ||||| || |||||||| || || ||||||||||||  |   |       | |||  ||     ||||     |||  |    | ||    | |                                
GTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaa-gagcaatcatccggtatatctctctctctgtctctcttgatgtggc-tcgttgacag-------------------------------

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ04915 (Selaginella moellendorffii), 5'ss of exon 9
GTTTTGGGCACCCCAACAAGAGAGGAAATTAAGTGCATGAATCCCAATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggatagaagcaggatattacttcaattctgctatgcttcttacaacctcacgaatattgattttcattcttattgtacctcctatcag
||| | || ||||| ||  | ||||| || ||||| ||||||||||| ||||| ||||| || ||||| ||||| || |||||||| ||||||||||| |         | |||  | | |||   |   ||  |  ||     |    |  |                                    
GTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCACCCTTGGCACAAGgtgc---------gtaggcaacttctttgttggggcggtcgtttacgtagtaacgtggcag--------------------------------

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ10962 (Selaginella moellendorffii), 5'ss of exon 9
GTTTTGGGCACCCCAACAAGAGAGGAAATTAAGTGCATGAATCCCAATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggatagaagcaggatattacttcaattctgctatgcttcttacaacctcacgaatattgattttcattcttattgtacctcctatcag
||| | || ||||| ||  | ||||| || ||||| ||||||||||| ||||| ||||| || ||||| ||||| || ||||| || ||||||||||| |         | |||  | | |||   |   ||  |  ||     |    |  |                                    
GTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCATCCTTGGCACAAGgtgc---------gtaggcaacttctttgttggggcggtcgtttacgtagtaacgtggcag--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33405137|gb|CF210764.1|CF210764
EST:     ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAG                         ATATTCCATAAGCGGATGCCCCCTGAGGCCGTCGATCTTGTCTCAAGACTG
genomic: ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggata ... ctcctatcagATATTCCATAAGCGGATGCCCCCTGAGGCCGTTGATCTTGTCTCAAGACTG
EST: gi|26262991|gb|CA814054.1|CA814054
EST:     ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAG                         ATATTCCATAAGCGGATGCCCCCTGAGGCCGTTGATCTTGTCTCAAGACTG
genomic: ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggata ... ctcctatcagATATTCCATAAGCGGATGCCCCCTGAGGCCGTTGATCTTGTCTCAAGACTG
EST: gi|161712353|gb|FC061927.1|FC061927
EST:     ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAG                         ATATTCCATAAGCGGATGCCCCCTGAGGCCGTTGATCTTGTCTCAAGACTG
genomic: ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggata ... ctcctatcagATATTCCATAAGCGGATGCCCCCTGAGGCCGTTGATCTTGTCTCAAGACTG
EST: gi|110360806|gb|EC924193.1|EC924193
EST:     ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAG                         ATATTCCATAAGCGGATGCCCCCTGAGGCCGTTGATCTTGTCTCAAGACTG
genomic: ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggata ... ctcctatcagATATTCCATAAGCGGATGCCCCCTGAGGCCGTTGATCTTGTCTCAAGACTG
EST: gi|110710881|gb|EE087442.1|EE087442
EST:     ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAG                         ATATTCCATAAGCGGATGCCCCCTGAGGCCGTTGATCCTGTCTCAAGACTG
genomic: ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggata ... ctcctatcagATATTCCATAAGCGGATGCCCCCTGAGGCCGTTGATCTTGTCTCAAGACTG
EST: gi|33405222|gb|CF210849.1|CF210849
EST:     ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAG                         ATATTCCATAAGCGGATGCCCCCTGAGGCCGTCGATCTTGTCTCAAGACTG
genomic: ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggata ... ctcctatcagATATTCCATAAGCGGATGCCCCCTGAGGCCGTTGATCTTGTCTCAAGACTG
EST: gi|110383074|gb|EC947423.1|EC947423
EST:     ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAG                         ATATTCCATAAGCGGATGCCCCCTGAGGCCGTCGATCTTGTCTCAAGACTG
genomic: ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggata ... ctcctatcagATATTCCATAAGCGGATGCCCCCTGAGGCCGTTGATCTTGTCTCAAGACTG
EST: gi|110378688|gb|EC943832.1|EC943832
EST:     ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAG                         ATATTCCATAAGCGGATGCCCCCTGAGGCCGTCGATCTTGTCTCAAGACTG
genomic: ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggata ... ctcctatcagATATTCCATAAGCGGATGCCCCCTGAGGCCGTTGATCTTGTCTCAAGACTG
EST: gi|110700287|gb|EE078155.1|EE078155
EST:     ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAG                         ATATTCCATAAGCGGATGCCCCCTGAG-CCGTTGATCTTGTCTCAAGACTG
genomic: ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggata ... ctcctatcagATATTCCATAAGCGGATGCCCCCTGAGGCCGTTGATCTTGTCTCAAGACTG
EST: gi|30252766|gb|CB970317.1|CB970317
EST:     ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAG                         ATATTCCATAAGCGGATGCCCCCTGAGGCCGTCGATCTTGTCTCGAGACTG
genomic: ATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAGgtactggata ... ctcctatcagATATTCCATAAGCGGATGCCCCCTGAGGCCGTTGATCTTGTCTCAAGACTG