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GTTTGATGTAAAGATAGCTAGAGCAGTTGCCGAGGAAACAAATTTACCATTCGTCACAGCAGAAAACAAGTTTGAAGCACTGgtgattttctaatcctcctaagagtctgtttgggagtgattttcaaaggacaaggaacactttcttacagaaattagttgtttaattttgaaaatcactt...
species | Vitis vinifera |
transcript | Vv07s0005g00880.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGGAAACAAATTTACCATTCGTCACAGCAGAAAACAAGTTTGAAGCACTG GCTGCACATGATGCATTTGTTGAAACTAGTGGTTCAGTTAACACTGTTGCTEST: gi|110363110|gb|EC926680.1|EC926680
genomic: AGGAAACAAATTTACCATTCGTCACAGCAGAAAACAAGTTTGAAGCACTGgtgattttct ... tttctgccagGCTGCACATGATGCATTTGTTGAAACTAGTGGTTCAGTTAACACTGTTGCT
EST: CAGCAGAAAACAAG-TTGAAAGCACTG GCTGCACATGATGCATTTGTTGAAACTAGTGGTGCAGTTAACACTGTTGCEST: gi|110361036|gb|EC924487.1|EC924487
genomic: CAGCAGAAAACAAGTTTG-AAGCACTGgtgattttct ... tttctgccagGCTGCACATGATGCATTTGTTGAAACTAGTGGTTCAGTTAACACTGTTGC
EST: AGAAAACAAATTTACCATTCGTCACAGCAGAAAACAAGTTTGAAGCACTG GCTGCACATGATGCATTTGTTGAAACTAGTGGTGCAGTTAACACTGTTGCTEST: gi|351045827|gb|FQ441012.1|FQ441012
genomic: AGGAAACAAATTTACCATTCGTCACAGCAGAAAACAAGTTTGAAGCACTGgtgattttct ... tttctgccagGCTGCACATGATGCATTTGTTGAAACTAGTGGTTCAGTTAACACTGTTGCT
EST: AGGAAACAAATTTACCATTCGTCACAGCAGAAAACAAGTTTGAAGCACTG GCTGCACATGATGCATTTGTTGAAACTAGTGGTTCAGTTAACACTGTTGCT
genomic: AGGAAACAAATTTACCATTCGTCACAGCAGAAAACAAGTTTGAAGCACTGgtgattttct ... tttctgccagGCTGCACATGATGCATTTGTTGAAACTAGTGGTTCAGTTAACACTGTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGATGTAAAGATAGCTAGAGCAGTTGCCGAGGAAACAAATTTACCATTCGTCACAGCAGAAAACAAGTTTGAAGCACTGgtgattttctaatcctcctaagagtctgtttgggagtgattttcaaaggacaaggaacactttcttacagaaattagttgtttaattttgaaaatcactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaaaa