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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGCCGGAGCTTTTCTAGGAGTCGCAGTCGATCCTACTCAAGGGGCAAGAGCGCTAGTCGCAGCCGCAGCCGAAGCTATAGTCGCAGCAGGAGCCAGAGgttatattgttttatttgggaatattaatcttggtctgtggtctgattgtccatggcttatattgttttaaactgtcgtgcag

Basic information

species Vitis vinifera
transcript Vv07s0005g00320.t01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110684800|gb|EE062491.1|EE062491
EST:     AGCGCTAGTCGCAGCCGCAGCCGAAGCTATAGTCGCAGCAGGAGCCAGAG                         CAAGTCTCCCAAGGCCAAATCCTCCCGTCGATCACGTTCTAGGTCTGTTTC
genomic: AGCGCTAGTCGCAGCCGCAGCCGAAGCTATAGTCGCAGCAGGAGCCAGAGgttatattgt ... tgtcgtgcagCAAGTCTCCAAAGGCCAAATCCTCCCGTCGATCACGTTCTAGGTCTGTTTC
EST: gi|110728249|gb|EE103650.1|EE103650
EST:     GCGCTAGTCCCAGCCGCAGCCGAAACTATAGTCCCAACAAGGAGCC-GAG                         CAGGTCTCCCAAGGCCAAATCCTCCCGGCGAACACGTTCTAGGTCTGGTTC
genomic: GCGCTAGTCGCAGCCGCAGCCGAAGCTATAGTCGCAGCA-GGAGCCAGAGgttatattgt ... tgtcgtgcagCAAGTCTCCAAAGGCCAAATCCTCCCGTCGATCACGTTCTAGGTCTGTTTC
EST: gi|351031962|gb|FQ460219.1|FQ460219
EST:     AGCGCTAGTCGCAGCCGCAGCCGAAGCTATAGTCGCAGCAGGAGCCAGAG                         CAAGTCTCCAAAGGCCAAATCCTCCCGTCGATCACGTTCTAGGTCTGTTTC
genomic: AGCGCTAGTCGCAGCCGCAGCCGAAGCTATAGTCGCAGCAGGAGCCAGAGgttatattgt ... tgtcgtgcagCAAGTCTCCAAAGGCCAAATCCTCCCGTCGATCACGTTCTAGGTCTGTTTC
EST: gi|351048120|gb|FQ442090.1|FQ442090
EST:     AGTCGCAGCCGCAGCCGCAGCCGAAGCTATAGTCGCAGCAGGAGCCAGAG                         CAAGTCTCCAAAGGCCAAATCCTCCCGTCGATCACGTTCTAGGTCTGTTTC
genomic: AGTCGCAGCCGCAGCCG-A----A-GCTATAGTCGCAGCAGGAGCCAGAGgttatattgt ... tgtcgtgcagCAAGTCTCCAAAGGCCAAATCCTCCCGTCGATCACGTTCTAGGTCTGTTTC
EST: gi|351017085|gb|FQ424512.1|FQ424512
EST:     AGCGCTAGTCGCAGCCGCAGCCGAAGCTATAGTCGCAGCAGGAGCCAGAG                         CAAGTCTCCAAAAGCCAAATCCTCCCGTCGATCACGTTCTA
genomic: AGCGCTAGTCGCAGCCGCAGCCGAAGCTATAGTCGCAGCAGGAGCCAGAGgttatattgt ... tgtcgtgcagCAAGTCTCCAAAGGCCAAATCCTCCCGTCGATCACGTTCTA
EST: gi|110688099|gb|EE066267.1|EE066267
EST:     AGCGCTAGTCGCAGCCGCAGCCGAAGCTATAGTCGCAGCAGGAGCCAGAG                         CAAGTCTCCCAAGGCCAAATCCTCCCGTCGATCACGTTCTAGGTC
genomic: AGCGCTAGTCGCAGCCGCAGCCGAAGCTATAGTCGCAGCAGGAGCCAGAGgttatattgt ... tgtcgtgcagCAAGTCTCCAAAGGCCAAATCCTCCCGTCGATCACGTTCTAGGTC
EST: gi|351025780|gb|FQ427792.1|FQ427792
EST:     AGCGCTAGTCGCAGCCGCAGCCGAAGCTATAGTCGCAGCAGGAGCCAGAG                         CAAGTCTCCAAAGGCCAAATCCTCCCGTCGATCACGTTCTAGGTCTGTTTC
genomic: AGCGCTAGTCGCAGCCGCAGCCGAAGCTATAGTCGCAGCAGGAGCCAGAGgttatattgt ... tgtcgtgcagCAAGTCTCCAAAGGCCAAATCCTCCCGTCGATCACGTTCTAGGTCTGTTTC
EST: gi|349807898|gb|FQ402289.1|FQ402289
EST:     AGCGCTAGTCGCAGCCGCAGCCGAAGCTATAGTCGCAGCAGGAGCCAGAG                         CAAGTCTCCAAAGGCCAAATCCTCCCGTCGATCACGTTCTAGGTCTGTTTC
genomic: AGCGCTAGTCGCAGCCGCAGCCGAAGCTATAGTCGCAGCAGGAGCCAGAGgttatattgt ... tgtcgtgcagCAAGTCTCCAAAGGCCAAATCCTCCCGTCGATCACGTTCTAGGTCTGTTTC