Sequence
atgc intronic sequence ATGC exonic sequenceACACTTTTTGAATGAAGCTGCAATTATCAGAAGTATAAAGTTAGTTGCTGAGAGTCTTGCGgtaagatctctatattgggagctagaacctgattgtggagtttcttttttatcatgctgatatactttttttctaattctgtggtgtccctattgttgtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0080g00880.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G18710.1 (Glycine max), 5'ss of exon 10
ACACTTTTTGAATGAAGCTGCAATTATCAGAAGTATAAAGTTAGTTGCTGAGAGTCTTGCGgtaagatc---tctatattgggagctagaacctgattgtggagtttcttttttatcatgctgatatactttttttctaattctgtggtgtccctattgttgtt---
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GCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGAGAGTCTTGCGgtaagattaattttacctcaaaaagtagaagtcaat------gcacacacaagaaaaccccaaaagattaggaatgtaaccttttgatgttttcgtaattattttt
upper sequence: Vv06s0080g00880.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA12G09710.1 (Glycine max), 5'ss of exon 11
ACACTTTTTGAATGAAGCTGCAATTATCAGAAGTATAAAGTTAGTTGCTGAGAGTCTTGCGgtaagatc---tctatattgggagctagaacctgattgtggagtttcttttttatcatgctgatatactttttttctaattctgtggtgtccctattgttgtt-
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GCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGAGAGTCTTGCGgtaagattaattttacctcaaaaagtagaagtcaat----gcacacacacaagaaaaccccaaaagattaggaatgtaaccttttggtgtttgtaattttttccMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352773102|gb|FQ470717.1|FQ470717EST: GCTGAGAGTCTTGCG AGGCACATCTATGGCCATGAGGGAAAGAACATTCAAATTTTTGCAGATGAC
genomic: GCTGAGAGTCTTGCGgtaagatctc ... ccttacacagAGGCACATCTATGGCCATGAGGGAAAGAACATTCAAATTTTTGCAGATGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACACTTTTTGAATGAAGCTGCAATTATCAGAAGTATAAAGTTAGTTGCTGAGAGTCTTGCGgtaagatctctatattgggagctagaacctgattgtggagtttcttttttatcatgctgatatactttttttctaattctgtggtgtccctattgttgtt
- - - - - - TGAAGC
- - - - - - - AAGCTG
- - - - - - - AGCTGC
- - - - - - - - - - - - - - AGAAGT