Sequence
atgc intronic sequence ATGC exonic sequenceGAAAACATGACTCGGATGCTGATGGTGTCCGATGTGCAGGATATTATTAAAAGACATCAGGCTCAAATCATAACCTCACTGAAGGATCCTGACATCAGgttaaacctgagtgctctgtattgttttgtttatttgttgacaatttcaaagctgtagatgcccttgcttataataatatttcggtactgagatttggtg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G137236_T01 (Zea mays), 5'ss of exon 11
GAAAACATGACTCGGATGCTGATGGTGTCCGATGTGCAGGATATTATTAAAAGACATCAGGCTCAAATCATAACCTCACTGAAGGATCCTGACATCAGgttaaacctgagtgctctgtattgttttgtttatttgttgacaatttcaaa-gctgtag-atgcccttgcttataataatatttcggtactgagatttggtg
|||||||||||| |||||||| | || | |||||||||||||| |||||||| || |||||||| ||||| || || |||||||||| || |||||||| || | | | | | |||| | || || | | | | ||| | | || ||| | | | | | | | | | ||| |
GAAAACATGACTAGGATGCTGTTAGTAACAGATGTGCAGGATATCATTAAAAGGCACCAGGCTCAGATCATCACATCTTTGAAGGATCCAGATATCAGgtttgactctcttccagtctgtaattttctatacttatcaaaaggattaaatggtataacatgaacatccagacgtttccccgtagatgatatgatattc--
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G700148_T01 (Zea mays), 5'ss of exon 10
GAAAACATGACTCGGATGCTGATGGTGTCCGATGTGCAGGATATTATTAAAAGACATCAGGCTCAAATCATAACCTCACTGAAGGATCCTGACATCAGgttaaac-ctgagtgctctgtattgttttgtttatttgttgacaatttcaaagctgtagatgcccttgcttataataatatttcggtactga-gatttggtg
|||||||||||| |||||||| | || | |||||||||||||| |||| ||| || ||||| || ||||| || || |||||||||| || |||||||| || ||| || | | | |||| | || || | | || | | ||| | | | | | || ||| || || ||| || |
GAAAACATGACTAGGATGCTGTTAGTAACAGATGTGCAGGATATCATTAGAAGGCACCAGGCCCAGATCATTACATCTTTGAAGGATCCAGATATCAGgtttgactctgttccctgtctgtaattttctatacttctcaa-aagaactgattggtata-acatgaacatccagacattttttcttatggatgatatgata
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 10
GAAAACATGACTCGGATGCTGATGGTGTCCGATGTGCAGGATATTATTAAAAGACATCAGGCTCAAATCATAACCTCACTGAAGGATCCTGACATCAGgttaaacctga-gtgctctgtattgttttgtttatttgttgacaatttcaaagctgtag-atgcccttgcttataataatatttcggtactgagatttggtg
|| || ||||| | ||| ||||||| | ||||| || ||||| |||||||||||||| ||||| || || |||||| ||||||||||||||||||||||| | || | || | | ||| | || | | | | | ||| || | || | ||| | | ||| || || | |
GAGAATATGACAAGAATGTTGATGGTTACTGATGTACAAGATATCATTAAAAGACATCAAGCTCAGATTATTACCTCATTGAAGGATCCTGACATCAGgttacatttgctatcctatatgttgacatcattgatcctgtata-tatcatcactaaattattttcatgcagaacccagcctttacttattggtaacatat-
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 10
GAAAACATGACTCGGATGCTGATGGTGTCCGATGTGCAGGATATTATTAAAAGACATCAGGCTCAAATCATAACCTCACTGAAGGATCCTGACATCAGgttaaacctgagtgctctgtattgttttgtttatttg---ttgacaatttcaaagctgtagatgcc--cttgcttataataatatttcggtactgagatttggtg
|| || ||||| | ||| ||||||| | ||||| || ||||| || ||||||||||| ||||| || || |||||| ||||||||||||||||||||||| | ||| | || ||| ||| || ||| || || ||| || | || | || || | | | | | | | | || ||
GAGAATATGACAAGAATGTTGATGGTTACTGATGTACAAGATATCATAAAAAGACATCAAGCTCAGATTATTACCTCATTGAAGGATCCTGACATCAGgttacatctgt-tatcctatat-gttgaacataattgatcctgtatatatcatcacta-aaatactaaattattttcatgcagaacccagcattta--cttactgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857368|gb|DT006423.1|DT006423EST: AAAAGACATCAGGCTCAAATCATAACCTCACTGAAGGATCCTGACATCAG TATAAGGAGACGAGCACTTGATCTGCTTTATGGTATGTGTGATATTTCAAA
genomic: AAAAGACATCAGGCTCAAATCATAACCTCACTGAAGGATCCTGACATCAGgttaaacctg ... aaccttgcagTATAAGGAGACGAGCACTTGATCTGCTTTATGGTATGTGTGATATTTCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAACATGACTCGGATGCTGATGGTGTCCGATGTGCAGGATATTATTAAAAGACATCAGGCTCAAATCATAACCTCACTGAAGGATCCTGACATCAGgttaaacctgagtgctctgtattgttttgtttatttgttgacaatttcaaagctgtagatgcccttgcttataataatatttcggtactgagatttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG