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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGAACTAAATTTAGGAAGATCATGAATAAAGCCGATAATGATGCAAGTACAAGGGCAATTGATTCACTTATCAATTATGAGgtttcaatatatctcttataaaggctttctttctagttaatgtcgatgcctttccttttcctagctaatattctttatataacttccactcacttaaatgttctaatttcag

Basic information

species Vitis vinifera
transcript Vv06s0004g08350.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA02G40490.1 (Glycine max), 5'ss of exon 7
TGGAGAACTAAATTTAGGAAGATCATGAATAAAGCCGATAATGATGCAAGTACAAGGGCAATTGATTCACTTATCAATTATGAGgtttcaatatatctcttataaaggctttctttctagttaatgtcgatgcctttccttttcctagctaatattctttatataacttccactcacttaaatgttctaatttcag
||||| |||||||| |||||   ||||||||| || ||||||||||| ||||||||||  |||||||||||||| |||||||||||   |  || |   | || || ||    ||| || |   | ||  | ||||| | | |  | | ||  | | ||| | |    |  | |  |                   
TGGAGGACTAAATTCAGGAAAGCCATGAATAAGGCAGATAATGATGCTAGTACAAGGGTTATTGATTCACTTATTAATTATGAGgtg--agcattttagtcattaatgccagttttttaat-gctatc--ttccttttcgtgtttttgttaccactgttttttttttcttgatttgcag-----------------

upper sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA14G38800.1 (Glycine max), 5'ss of exon 7
TGGAGAACTAAATTTAGGAAGATCATGAATAAAGCCGATAATGATGCAAGTACAAGGGCAATTGATTCACTTATCAATTATGAGgtttcaatatatctcttataaaggctttctttctagttaatgtcgatgcctttccttttcctagctaatattctttatataacttccactcacttaaatgttctaatttcag
||||| ||||| || |||||   ||||||||| || |||||||||||  |||||||||  |||||||||||||| |||||||||||   |  || |   | || || ||    ||| || |   | ||      |||   |||     | | | || |||   |   || ||                        
TGGAGGACTAAGTTCAGGAAAGCCATGAATAAGGCGGATAATGATGCTGGTACAAGGGTTATTGATTCACTTATTAATTATGAGgtg--agcattttggtcattaatgccagttttttaat-gttatcctcctttttgtgtttttgtaccactttttttttcttgttttgcag-----------------------

upper sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT5G58270.1 (Arabidopsis thaliana), 5'ss of exon 6
TGGAGAACTAAATTTAGGAAGATCATGAATAAAGCCGATAATGATGCAAGTACAAGGGCAATTGATTCACTTATCAATTATGAGgtttcaatatatctcttataaaggctttctttctagtt--aatgtcgatgcctttccttttcctagctaatattctttatataacttccactcacttaaatgttctaatttcag
||| |||| || ||||| |||   ||||| ||||| ||||||||||| || |||||||| |||||||| || || |||||||||||    | || | |  | | ||   |||   |  | ||  | | | ||     || ||||| |     |                                             
TGGCGAACCAAGTTTAGAAAGGCTATGAACAAAGCTGATAATGATGCTAGCACAAGGGCCATTGATTCTCTGATAAATTATGAGgt----aaatttttaatcttaatcattttgcttgacttgcagttttgacagaatttctttttcgtttcag--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18458309|gb|BM436587.1|BM436587
EST:     GCAAGTACAAGGGCAATTGATTCACTTATCAATTATGAG                         ACTGTGAAATATTTCAACAGTGAAGCTTTTGAAGTTGAGAAGTATGATGAA
genomic: GCAAGTACAAGGGCAATTGATTCACTTATCAATTATGAGgtttcaatat ... ctaatttcagACTGTGAAATATTTCAACAGTGAAGCTTTTGAAGTTGAGAAGTATGATGAA