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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgcaaaaataattataattttatgaccataggattgaccatgtattggttattattaagattatttgaagcccaattttcttcatgttaaag

Basic information

species Vitis vinifera
transcript Vv06s0004g04390.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 10
TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgcaaaaataattataattttatgaccataggattgaccatgtattggttattattaagattatttgaagcccaattttcttcatgttaaag
||||||||| |||||||| ||| |||| |||||||| ||||||||||||||||||||||||||  ||||||  |       |   | ||  ||     |   |||||     | || ||  ||  |||| | |||  | |    ||| |  |          
TGGTGAACCCTTGACAGTCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTGgtatata-------tctcatttgcatctttgtttcattgagttactgttagtatttggtaagctgatt--atgttttattgtgatag--------

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 10
TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgcaaaaataattataattttatgaccataggattgaccatgtattggttattattaagattatttgaagcccaattttcttcatgttaaag
||||||||| |||||||| ||| |||| |||||||| ||||||||||||||||||||||||||  ||||||          |   | ||  ||     |   |||||     |||| ||  ||  |||| | |||  | |    ||| |  |          
TGGTGAACCCTTGACAGTCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTGgtatatt-------tctcatttgcatctttgtttcattgagttactattagtatttggtaagctgatt--atgtttgattgtgatag--------

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 10
TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgcaaaa---ataattataattttatgaccataggattgac-catgtattggttattattaag-attatttgaagcccaattttcttcatgttaaag
||||||||| ||||| || || | ||| ||||| || ||||||||||||||||||||||||||||||||||  |  |   ||  || | ||||       ||    ||||  || ||| | |   | ||| |  |  |||  |      |  |   | |        
TGGTGAACCCTTGACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTCTGCTATGTCTCTGACATGgtatatatgatacatgtttcttatttgtgatttattatcttgattcaagtactaggcgtgattgactaagattatacatttgaaatctattag-------

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA12G06980.1 (Glycine max), 5'ss of exon 10
TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgca--aaaataattataattttatg-accataggattgac-catgtattggttattattaagattatttgaagcccaattttcttcatgttaaag
||||||||| || || || || | ||| ||||| || ||||||||||| ||||||||||||||||||||||  |  | | |  ||    ||||  |     |    ||||  || ||| | | | | ||| |   |  |   |       ||      | |||   
TGGTGAACCCTTAACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATGgtatatattatacttgtttctcttttgagtgttgttatcttgattcaagtactaggtgtgattgactatgatcatatatacgcttgaaatttattag--

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 11
TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgcaaaaataattataattttatgaccataggattgaccatgtattggttattattaagattatttgaagcccaattttcttcatgttaaag
 || ||||| |||||||| ||   ||| |||||||| ||||| ||||||||||||||||||||| ||||  | | |  |    ||||| |    | | |   ||| || |  |    |  |  ||   ||||||   |      |  | | | |        
GGGGGAACCATTGACAGTCCAATGTCCAGGAACACAAACTCGAAGTTTCTGCTATGTCTCTGACCTGgttggtatatgtt-ccataatctatgtatctttaaatt-actacctgaatgccagaat-gtgattatgatatttatgagatgccttag-------

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 11
TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgcaaaaataattataattttatgaccataggattgaccatgta-ttggttattattaagattatttgaagcccaattttcttcatgttaaag
 || ||||| |||||||| ||   ||| |||||||| ||||| |||||||| |||||||||||| |||||          || ||   | |||    | |  | |  |    ||  ||  | | |||| || | | |||      ||||     ||||   ||
GGGGGAACCATTGACAGTCCAATGTCCGGGAACACAAACTCGAAGTTTCTGTTATGTCTCTGACCTGgtaaatgtc--ccataatctatgtatctttaaattactacctgaatagctgaatgtgattatgaatttatgat-----atttatgagatgtcttag

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 5'ss of exon 9
--------------------TGGTGAACCTTTGACAGTTCA--GGCTCCTGGAACACAGACTCGCAGTTTCTGCTA-TGTCTCTGACAT-Ggta-tgcaaaaataattataattttatgaccataggattgaccatgtattggtta--ttattaagattat--ttgaagcccaattttcttcatgttaaag
                    |  || | ||   |  ||| |  | ||  ||   | ||     | || |    ||  |  |    |||| ||||   ||   | | |    | | |    ||||  ||   | ||          |   | || |  ||||  ||   | || | | | |   |  | |  
ACACAGACTCGCAGTTTCTGTTATGTATCTGACATGGTTGATGGACTTATGCGCCTCATGGAAGGAGATGACACTGGTCCCATCAACATCGGTAACCCAGgtaaagtccgtaatattcctccattagacaaaacacaacccaaccaatctcttgaacttatgctttgtgtccgactctttggtttctcag-

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT5G59290.1 (Arabidopsis thaliana), 5'ss of exon 10
----------------------------------TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTA-TGTCTCTGACAT-Ggtatgcaaaaataattataatttta---tgaccataggattgaccatgtattggttattattaagattatttgaagcccaattttcttcatgttaaag
                                  ||||| |   | |||   || | ||  |||||  ||      | |   ||   |   ||  | ||   |||  ||      | |   |  ||||   | |||   | |   |   |||  || || || ||    ||  ||    |  ||    ||   | |   ||
ACACAGACCCGCAGTTTCTGTTATGTCTCCGACATGGTGGA---TGGACTTATCCGTCTTATGGAAGGCAATGATACTGGCCCTATCAACATCGGTAACCCAGgtccgcctttccattccaacatttaccttaacccctgtaactagagtgtggtgttt-ttgtttcatttgcttttttctaaaacccctctgtttctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71885522|gb|DT034577.1|DT034577
EST:     TTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATG                         GTTGATGGGCTGATTCGACTCATGGAAGGAGAGAACACTGGGCCAATCAAC
genomic: TTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgcaaaa ... catgttaaagGTTGATGGGCTGATTCGACTCATGGAAGGAGAGAACACTGGGCCAATCAAC
EST: gi|33407209|gb|CF212836.1|CF212836
EST:     TTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATG                         GTTGATGGGCTGATTCGACTCATGGAAGGAGAGAACACTGGGCCAATCAAC
genomic: TTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgcaaaa ... catgttaaagGTTGATGGGCTGATTCGACTCATGGAAGGAGAGAACACTGGGCCAATCAAC
EST: gi|71888765|gb|DT037820.1|DT037820
EST:     TTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATG                         GTTGATGGGCTGATTCGACTCATGGAAGGAGAGAACACTGGGCCAATCAAC
genomic: TTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgcaaaa ... catgttaaagGTTGATGGGCTGATTCGACTCATGGAAGGAGAGAACACTGGGCCAATCAAC
EST: gi|30297461|gb|CB974255.1|CB974255
EST:     TTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATG                         GATGATGANCTGATTCGTCTCAT
genomic: TTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgcaaaa ... catgttaaagGTTGATGGGCTGATTCGACTCAT
EST: gi|33407983|gb|CF213610.1|CF213610
EST:     TTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATG                         ATTGATGGATTGATTCGACTCATGGAAGGAGAGAACACTGATCCAATCAAC
genomic: TTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgcaaaa ... catgttaaagGTTGATGGGCTGATTCGACTCATGGAAGGAGAGAACACTGGGCCAATCAAC
EST: gi|56408375|gb|CX016627.1|CX016627
EST:     TTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATG                         GTTGATGGGCTGATTCGTCTCATGGAAGGAGAGAACACTGGGCCAATCAAC
genomic: TTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgcaaaa ... catgttaaagGTTGATGGGCTGATTCGACTCATGGAAGGAGAGAACACTGGGCCAATCAAC