Sequence
atgc intronic sequence ATGC exonic sequenceGCTGCTCAATTCATGGAAAGAAAGAAGAAGGGCATTGTTTACAGAGAATGCGGAGAGAATGAAGCGTGTGCTTGATAATTTACAGAAGAAACTTGATGAGgttagcacagtaggatggttgttttgtccgcagaatgtgtctatttttttttgataagtaggatgtgtctatatgtatatatatgtatgtatgtatgcat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03970.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G15470.1 (Glycine max), 5'ss of exon 10
GCTGCTCAATTCATGGAAAGAAAGAAGAAGGGCATTGTTTACAGAGAATGCGGAGAGAATGAAGCGTGTGCTTGATAATTTACAGAAGAAACTTGATGAGgttagcacagtaggatggttgttttgtccgcagaatgtgtctat--ttttttttgataagtaggat--gtgtctatatgtatatatatgtatgtatgtatgcat-------------------------------------------------------
| ||| ||| |||| || | || | ||||||| ||||| | ||||| || |||||||| ||| ||||||||||||| ||||||||||||||||||||| | || | || | |||||| || || || || || | || |||| | | ||| | || | |||| ||| | |||
AATAATCAGTTCTTGGATGGAGAAAAAGAAGGCATTGCTTACAAACAATGCAGAAAGAATGAAACGTTTGCTTGATAATTTGCAGAAGAAACTTGATGAGgtttg-actgctaattgcattttttgtttttttc-tgcatccattattgttgtctttatgtagctttcttttcttctttcattcaagggtatttatcaagacatgtaaaattagtgcccttttatatgtacagtttctgatgttcatcttttttggcag
upper sequence: Vv06s0004g03970.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA12G07980.1 (Glycine max), 5'ss of exon 10
GCTGCTCAATTCATGGAAAGAAAGAAGAAGGGCATTGTTTACAGAGAATGCGGAGAGAATGAAGCGTGTGCTTGATAATTTACAGAAGAAACTTGATGAGgttagcacagtaggatg--gttgttttgtccgcagaatgtgt-----ctatt-tttttttgataagtaggatgtgtctatatgtatatatatgtatgtatgtatgcat-------------------------------------------------------------
| ||| || |||| || | || | ||||||| ||||| | ||||| || |||||||| | | ||||||||||||| || |||||||||||||||||| | || | || |||| | | | || ||||| || | | || || | | ||| | || | |||| ||| || |||
AATAATCAGTTATTGGATGGAGAAAAAGAAGGCATTGCTTACAAACAATGCAGAAAGAATGAAACATTTGCTTGATAATTTGCAAAAGAAACTTGATGAGgtttgactgctaaagtttcatttttttttttgttttttctgcatccactattgttctgtctttatgtgctttatttcttctttaattcaagggtatttatctagccatgcaaaattagtggccttttatatgtacagtttcctatgtgcgttgtttttttttttggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161709009|gb|FC058795.1|FC058795EST: CGGAGAGAATGAAGCGTGTGCTTGATAATTTACAGAAGAAACTTGATGAG TCTTTCTTAAATATGCAGCTCTATGTAAAAGCACTAGATTTGTTTGAAGAT
genomic: CGGAGAGAATGAAGCGTGTGCTTGATAATTTACAGAAGAAACTTGATGAGgttagcacag ... ccctctccagTCTTTCTTAAATATGCAGCTCTATGTAAAAGCACTAGATTTGTTTGAAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGCTCAATTCATGGAAAGAAAGAAGAAGGGCATTGTTTACAGAGAATGCGGAGAGAATGAAGCGTGTGCTTGATAATTTACAGAAGAAACTTGATGAGgttagcacagtaggatggttgttttgtccgcagaatgtgtctatttttttttgataagtaggatgtgtctatatgtatatatatgtatgtatgtatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA