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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGACTTTTGGTTCCCCGTGGTCTGACGAGCCAGCCAAAGGAGATCCAGAGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACATgtatgttgctattatcgtgttgtttaaatttctctatgctcttgggcatttctcttttgtgattgccacttttggtttgttgcag

Basic information

species Vitis vinifera
transcript Vv06s0004g03940.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g03940.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA15G04780.1 (Glycine max), 5'ss of exon 11
CAAGACTTTTGGTTCCCCGTGGTCTGACGAGCCAGCCAAAGGAGATCCAGAGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACATgtatgttgctatt-atcgtgttgtttaaatttctctatgctcttgggcatttctcttttgtgattgccacttttggtttgttgcag
|||||||||| | |||||||||||||| || |||||||| || |||||||||||||| |||   || |||||||||| |||||| || |||||||| || ||  | || | || ||  || | | ||| ||||  |   ||  |      |  | | ||| | |     ||||| || |  |||||
CAAGACTTTTCGGTCCCCGTGGTCTGATGAACCAGCCAAGGGTGATCCAGAGTTCAGTGTGTTACAATGTTATTATGTTAAACAGCCTCCTGCTCTTCACgtgagatgttctttattttgctttataa-tttcattgcccttatcttttgtgttttattgaggtcaagtctttttgtgttatgcag

upper sequence: Vv06s0004g03940.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G40650.1 (Glycine max), 5'ss of exon 10
CAAGACTTTTGGTTCCCCGTGGTCTGACGAGCCAGCCAAAGGAGATCCAGAGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACATgtatgttgctatt-atcgtgttgtttaaatttctctatgctcttgggcatttctcttttgtgattgcca---cttttggtttgttgcag--------------
|||||||||| | || ||||||||||| || || ||||| || |||||||||||||| ||||  || |||||||||||||||||  | ||| | || |||||  | |  | || ||  || | ||||| ||  |   ||| |||     ||| | |||| |    |||    ||||| || |  |||||              
CAAGACTTTTCGGTCTCCGTGGTCTGATGAACCGGCCAAGGGTGATCCAGAGTTCAGTGTGCTACAATGTTATTATGCTAAACAGTCTCCTTCCCTTCATgtgagatattctttattttgctttttaatttcat---tgcccttatctttttgtgttttattgaggccgagtctttttgtgtcatgcagcaaggttatttttc

upper sequence: Vv06s0004g03940.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA12G07970.1 (Glycine max), 5'ss of exon 10
CAAGACTTTTGGTTCCCCGTGGTCTGACGAGCCAGCCAAAGGAGATCCAGAGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACATgtatgttgctattatcgtgttgttta-aatttc---tctatgctcttgggcatttctcttttg-tgattgccacttttggtttgttgcag
|||||| ||||| || || |||||||| ||  |||| || || ||||||||||| |  ||||| || ||||||||||| ||||| |||||||||||||||||  | |  |   ||  |||| |||| ||||||   ||  |  | |    | |||   ||  | | | |     || | |  || |||||
CAAGACCTTTGGGTCTCCATGGTCTGATGAATCAGCTAAGGGCGATCCAGAGTTTACTGTGCCACAATGTTATTATGCCAAACAGCCACCTGCTCTACATgtgagatatttacattatgttttttataatttcatttccctattttcaaaccttttctttgggctaacttttcattattgcatgatgcag

upper sequence: Vv06s0004g03940.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA12G07970.2 (Glycine max), 5'ss of exon 10
CAAGACTTTTGGTTCCCCGTGGTCTGACGAGCCAGCCAAAGGAGATCCAGAGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACATgtatgttgctattatcgtgttgttta-aatttc---tctatgctcttgggcatttctcttttg-tgattgccacttttggtttgttgcag----------
|||||| ||||| || || |||||||| ||  |||| || || ||||||||||| |  ||||| || ||||||||||| ||||| |||||||||||||||||  | |  |   ||  |||| |||| ||||||   ||  |  | |    | |||   ||  | | | |     || | |  || |||||          
CAAGACCTTTGGGTCTCCATGGTCTGATGAATCAGCTAAGGGCGATCCAGAGTTTACTGTGCCACAATGTTATTATGCCAAACAGCCACCTGCTCTACATgtgagatatttacattatgttttttataatttcatttccctattttcaaaccttttctttgggctaacttttcattattgcatgatgcagcaaggttatt

upper sequence: Vv06s0004g03940.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G15480.1 (Glycine max), 5'ss of exon 10
CAAGACTTTTGGTTCCCCGTGGTCTGACGAGCCAGCCAAAGGAGATCCAGAGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACATgtatgttgctattatcgtgttgtttaaatt--tctctatgctcttgggcatttctcttttg-tgattgccacttttggtttgttgcag
|||||| ||||| || || ||| |||| ||  |||| || |||||||||||||| |  ||||| || ||||||| ||| ||||| |||||||||||||||||  | |  |   ||  |||| | ||| ||  | ||  |  | |    | |||   ||  | | | |     || | |  || |||||
CAAGACCTTTGGGTCTCCATGGACTGATGAATCAGCTAAGGGAGATCCAGAGTTTACAGTGCCACAATGTTATTTTGCCAAACAGCCACCTGCTCTACATgtgagatttttacattatgttttataatttcatttccctattttcaaaccttttctttgggctaactttttattattgcatgatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110375098|gb|EC940056.1|EC940056
EST:     AGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACAT                         CAAGGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTAT
genomic: AGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACATgtatgttgct ... tttgttgcagCAAGGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTAT
EST: gi|34361715|gb|CF403300.1|CF403300
EST:     AGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACAT                         CAAGGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTAT
genomic: AGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACATgtatgttgct ... tttgttgcagCAAGGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTAT
EST: gi|110361031|gb|EC924481.1|EC924481
EST:     AGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACAT                         CAAGGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTAT
genomic: AGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACATgtatgttgct ... tttgttgcagCAAGGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTAT
EST: gi|110414858|gb|EC980718.1|EC980718
EST:     AGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACAT                         CAAGGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTAT
genomic: AGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACATgtatgttgct ... tttgttgcagCAAGGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTAT
EST: gi|110715851|gb|EE094372.1|EE094372
EST:     AGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACAT                         CAAGGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTAT
genomic: AGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACATgtatgttgct ... tttgttgcagCAAGGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTAT
EST: gi|110719513|gb|EE094707.1|EE094707
EST:     GTTCAGCGTGCCTCAGTGTTATTATGCTAAAACA-CCACCTGCTCTACAT                         CAAGGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTAT
genomic: GTTCAGCGTGCCTCAGTGTTATTATGCTAAA-CAACCACCTGCTCTACATgtatgttgct ... tttgttgcagCAAGGTTACTTCTTGAAGTTCCAGGTGGAGACATTGTTTTATATTTTCTAT