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ATTTTAGCAATCCGTGCACAGGTGGAGGAACTGATTATAGATGAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAGgtctgatttgcattttacatattctgtacacaggatcctagctacccttcctcccatgaatactcaaatctaatcttaatgttccatcag
species | Vitis vinifera |
transcript | Vv06s0004g02910.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAG GCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGGEST: gi|71878775|gb|DT027830.1|DT027830
genomic: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAGgtctgatttg ... gttccatcagGCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGG
EST: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAG GCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGGEST: gi|32246436|gb|CD712255.1|CD712255
genomic: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAGgtctgatttg ... gttccatcagGCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGG
EST: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAG GCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGGEST: gi|77579990|gb|DV218875.1|DV218875
genomic: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAGgtctgatttg ... gttccatcagGCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGG
EST: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAG GCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGGEST: gi|32246435|gb|CD712254.1|CD712254
genomic: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAGgtctgatttg ... gttccatcagGCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGG
EST: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAG GCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGGEST: gi|71880713|gb|DT029768.1|DT029768
genomic: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAGgtctgatttg ... gttccatcagGCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGG
EST: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAG GCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGGEST: gi|27586915|gb|CB009610.1|CB009610
genomic: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAGgtctgatttg ... gttccatcagGCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGG
EST: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAG GCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGGEST: gi|71877702|gb|DT026757.1|DT026757
genomic: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAGgtctgatttg ... gttccatcagGCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGG
EST: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAG GCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGGEST: gi|77584731|gb|DV221439.1|DV221439
genomic: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAGgtctgatttg ... gttccatcagGCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGG
EST: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAG GCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGGEST: gi|71876313|gb|DT025368.1|DT025368
genomic: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAGgtctgatttg ... gttccatcagGCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGG
EST: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAG GCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGGEST: gi|71885171|gb|DT034226.1|DT034226
genomic: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAGgtctgatttg ... gttccatcagGCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGG
EST: AAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAAGAAGCTTCATTAAG GCATGCAGTTCAGCTCTTATCACCCTGCTAGCATTATGGCCAGGATGAATGEST: gi|110689388|gb|EE065570.1|EE065570
genomic: AAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAA-GAAGCTTCATTAAGgtctgatttg ... gttccatcagGCATGCAGTTCAGCTCTTATCACC-TGCTAGCATTATGGCCAGGATGAATG
EST: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAG GCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGG
genomic: GAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAGgtctgatttg ... gttccatcagGCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTTAGCAATCCGTGCACAGGTGGAGGAACTGATTATAGATGAAGAAAGTCTAGCTTACCTTGGAGAAATTGGACAAGAAGCTTCATTAAGgtctgatttgcattttacatattctgtacacaggatcctagctacccttcctcccatgaatactcaaatctaatcttaatgttccatcag
- - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC