1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AATTACTGAAGAGAAACCTGGGTGGTGTAGTGACCCACATTTACCTCCATGTGCAGCgtatgctttctctctgttctccctctcttgcatatctggtgtgcgtgaatttgtctttatgagtgttaaaacatgcataaacacaatgtaaaaataaatattcaaatatttgtaacatagggtaaatatgttgtcttgggacttgcattttctcccctctcccctcttaggcttacagttttctacattaattcag
species | Vitis vinifera |
transcript | Vv06s0004g02700.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAAGAGAAACCTGGGTGGTGTAGTGACCCACATTTACCTCCATGTGCAGC ATTTGTGGAAATTATGGCCCCTGTCTTCTCTCGGGAAGCTTGGCGTTGTGTEST: gi|37184080|gb|CF603434.1|CF603434
genomic: GAAGAGAAACCTGGGTGGTGTAGTGACCCACATTTACCTCCATGTGCAGCgtatgctttc ... attaattcagATTTGTGGAAATTATGGCCCCTGTCTTCTCTCGGGAAGCTTGGCGTTGTGT
EST: GAAGAGAAACCTGGGTGGTGTAGTGACCCACATTTACCTCCATGTGCAGC ATTTGTGGAAATTATGEST: gi|30330471|gb|CD013733.1|CD013733
genomic: GAAGAGAAACCTGGGTGGTGTAGTGACCCACATTTACCTCCATGTGCAGCgtatgctttc ... attaattcagATTTGTGGAAATTATG
EST: GAAGAGAAACCTGGGTGGTGTAGTGACCCACATTTACCTCCATGTGCAGC ATTTGTGGAAATTATGGCCCCTGTCTTCTCTCGGGAAGCTGGGCGTTGTGTEST: gi|110362972|gb|EC926537.1|EC926537
genomic: GAAGAGAAACCTGGGTGGTGTAGTGACCCACATTTACCTCCATGTGCAGCgtatgctttc ... attaattcagATTTGTGGAAATTATGGCCCCTGTCTTCTCTCGGGAAGCTTGGCGTTGTGT
EST: GAAGAGAAACCTGGGTGGTGTAGTGACCCACATTTACCTCCATGTGCAGC ATTTGTGGAAATTATGGCCCCTGTCTTCTCTCGGGAAGCTTGGCGTTGTGTEST: gi|30330504|gb|CD013766.1|CD013766
genomic: GAAGAGAAACCTGGGTGGTGTAGTGACCCACATTTACCTCCATGTGCAGCgtatgctttc ... attaattcagATTTGTGGAAATTATGGCCCCTGTCTTCTCTCGGGAAGCTTGGCGTTGTGT
EST: GAAGAGAAACCTGGGTGGTGTAGTGACCCACATTTACCTCCATGTGCAGC ATTTGTGGAAATTATGGCCCCTGTCTTCTCTCGGGAAGCTNGGCGTTGTGT
genomic: GAAGAGAAACCTGGGTGGTGTAGTGACCCACATTTACCTCCATGTGCAGCgtatgctttc ... attaattcagATTTGTGGAAATTATGGCCCCTGTCTTCTCTCGGGAAGCTTGGCGTTGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTACTGAAGAGAAACCTGGGTGGTGTAGTGACCCACATTTACCTCCATGTGCAGCgtatgctttctctctgttctccctctcttgcatatctggtgtgcgtgaatttgtctttatgagtgttaaaacatgcataaacacaatgtaaaaataaatattcaaatatttgtaacatagggtaaatatgttgtcttgggacttgcattttctcccctctcccctcttaggcttacagttttctacattaattcag
- - - - AAGAGA