Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTTCTGTCATCCATCCTTGGAACTGGAATGCAGTCTGCAGCAAAACTGTTCACAAAGGATCTCAGTGTCCTCCATCTCATCAGTATAGGCATTCCGgtatcccctcttgactgtagaccaaaaaacacaagatctctacctcttaattctatcattgtccttgaattcatgacaatttctttgtttcatatcag

Basic information

species Vitis vinifera
transcript Vv06s0004g02140.t01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294967324|gb|GW836678.1|GW836678
EST:     TGTTCACAAAGGATCTCAGTGTCCTCCATCTCATCAGTATAGGCATTCCG                         TTTGTTGCAGTTACTCAAGCTATCAACTCTCTGGCCTTT-TGTTTCGATGG
genomic: TGTTCACAAAGGATCTCAGTGTCCTCCATCTCATCAGTATAGGCATTCCGgtatcccctc ... ttcatatcagTTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTT-GATGG
EST: gi|30252403|gb|CB969954.1|CB969954
EST:     TGTTCACAAAGGATCTCAGTGTCCTCCATCTCATCAGTATAGGCATTCCG                         TTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGG
genomic: TGTTCACAAAGGATCTCAGTGTCCTCCATCTCATCAGTATAGGCATTCCGgtatcccctc ... ttcatatcagTTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGG
EST: gi|110698510|gb|EE076088.1|EE076088
EST:     TGTTCACAAAGGATCTCAGTGTCCTCCATCTCATCAGTATAGGCATTCCG                         TTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGG
genomic: TGTTCACAAAGGATCTCAGTGTCCTCCATCTCATCAGTATAGGCATTCCGgtatcccctc ... ttcatatcagTTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGG
EST: gi|33405457|gb|CF211084.1|CF211084
EST:     TGTTCACAAAGGATCTCAGTGTCCTCTATCTCATCAGTATAGGCATTCCG                         TTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGG
genomic: TGTTCACAAAGGATCTCAGTGTCCTCCATCTCATCAGTATAGGCATTCCGgtatcccctc ... ttcatatcagTTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGG
EST: gi|46918193|gb|CN547522.1|CN547522
EST:     TGTTCACAAAGGATCTCAGTGTCCTCCATCTCATCAGTATAGGCATTCCG                         TTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGG
genomic: TGTTCACAAAGGATCTCAGTGTCCTCCATCTCATCAGTATAGGCATTCCGgtatcccctc ... ttcatatcagTTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGG
EST: gi|30301245|gb|CB978039.1|CB978039
EST:     TGTTCACAAAGGATCTCAGTGTCCTCCATCTCATCAGTATAGGCATTCCG                         TTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGGTTTTGAT
genomic: TGTTCACAAAGGATCTCAGTGTCCTCCATCTCATCAGTATAGGCATTCCGgtatcccctc ... ttcatatcagTTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGAT