1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGCCAATCATCTACCATAAATTTGCGGATACCAGTTTGGGCTTCTTCAAGTGGTGCCAAAGCCTCAATTAATGCTCAGGATCTGCCTGTACCAGCTCCAAgtgtgaacttgaactaccatcatttctattcctttttctttacatttatacattgtttagcatgttctttctttgtaccatagtaatctttttttcaatttggttatatattttttgagtaaatcatgagatttcttgatgcag
species | Vitis vinifera |
transcript | Vv06s0004g01770.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGGTGCCAAAGCCTCAATTAATGCTCAGGATCTGCCTGTACCAGCTCCAA GTAGTTTCCTATCATTGACAAGAAACTGGAGCCCTGGTGATAAATTGACCCEST: gi|351054198|gb|FQ450280.1|FQ450280
genomic: TGGTGCCAAAGCCTCAATTAATGCTCAGGATCTGCCTGTACCAGCTCCAAgtgtgaactt ... cttgatgcagGTAGTTTCCTATCATTGACAAGAAACTGGAGCCCTGGTGATAAATTGACCC
EST: TGGTGCCAAAGCCTCAATTAATGCTCAGGATCTGCCTGTACCAGCTCCAA GTAGTTTCCTATCATTGACAAGAAACTGGAGCCCTGGTGATAAATTGACCCEST: gi|110699440|gb|EE076439.1|EE076439
genomic: TGGTGCCAAAGCCTCAATTAATGCTCAGGATCTGCCTGTACCAGCTCCAAgtgtgaactt ... cttgatgcagGTAGTTTCCTATCATTGACAAGAAACTGGAGCCCTGGTGATAAATTGACCC
EST: TGGTGCCAAAGCCTCAATTAATGCTCAGGATCTGCCTGTACCAGCTCCAA GTAGTTTCCTATCATTGACAAGAAACTGGAGCCCTGGTGATAAATTGACCCEST: gi|351022487|gb|FQ447009.1|FQ447009
genomic: TGGTGCCAAAGCCTCAATTAATGCTCAGGATCTGCCTGTACCAGCTCCAAgtgtgaactt ... cttgatgcagGTAGTTTCCTATCATTGACAAGAAACTGGAGCCCTGGTGATAAATTGACCC
EST: TGGTGCCAAAGCCTCAATTAATGCTCAGGATCTGCCTGTACCAGCTCCAA GTAGTTTCCTATCATTGACAAGAAACTGGAGCCCTGGTGATAAATTGACCCEST: gi|110723755|gb|EE101433.1|EE101433
genomic: TGGTGCCAAAGCCTCAATTAATGCTCAGGATCTGCCTGTACCAGCTCCAAgtgtgaactt ... cttgatgcagGTAGTTTCCTATCATTGACAAGAAACTGGAGCCCTGGTGATAAATTGACCC
EST: ATTAATGCTCAGGATCTGCCTGTACCAGCTCCAA GTAGTTTCCTATCATTGACAAGAAACTGGAGCCCTGGTGATAAATTGACCC
genomic: ATTAATGCTCAGGATCTGCCTGTACCAGCTCCAAgtgtgaactt ... cttgatgcagGTAGTTTCCTATCATTGACAAGAAACTGGAGCCCTGGTGATAAATTGACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCAATCATCTACCATAAATTTGCGGATACCAGTTTGGGCTTCTTCAAGTGGTGCCAAAGCCTCAATTAATGCTCAGGATCTGCCTGTACCAGCTCCAAgtgtgaacttgaactaccatcatttctattcctttttctttacatttatacattgtttagcatgttctttctttgtaccatagtaatctttttttcaatttggttatatattttttgagtaaatcatgagatttcttgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC