1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGTGGTTACTATATTTAGTGCACCAAATTATTGTTATCGCTGTGGGAACATGGCTTCCATCCTGGAAGTTGATGATTGCAAGGGCCACACATTCATTCAGgtatactttcctgatctctttctctctcatacattcaaccacacatgcacgtgacgtacacgccatccactttttcacaatggtgttggaaaggagtttt...
species | Vitis vinifera |
transcript | Vv06s0004g00830.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGGCTTCCATCCTGGAAGTTGATGATTGCAAGGGCCACACATTCATTCAG TTTGAGCCAGCACCAAGGAGGGGAGAGCCTGATGTAACTCGGAGAACACCTEST: gi|110379397|gb|EC944588.1|EC944588
genomic: TGGCTTCCATCCTGGAAGTTGATGATTGCAAGGGCCACACATTCATTCAGgtatactttc ... tttgttgcagTTTGAGCCAGCACCAAGGAGGGGAGAGCCTGATGTAACTCGGAGAACACCT
EST: TGGCTTCCATCCTGGAAGTTGATGATTGCAAGGGCCACACATTCATTCAG TTTGAGCCAGCACCAAGGAGGGGAGAGCCTGATGTAACTCGGAGAACACCTEST: gi|110380939|gb|EC946242.1|EC946242
genomic: TGGCTTCCATCCTGGAAGTTGATGATTGCAAGGGCCACACATTCATTCAGgtatactttc ... tttgttgcagTTTGAGCCAGCACCAAGGAGGGGAGAGCCTGATGTAACTCGGAGAACACCT
EST: TGGCTTCCATCCTGGAAGTTGATGATTGCAAGGGCCACACATTCATTCAG TTTGAGCCAGCACCAAGGAGGGGAGAGCCTGATGTAACTCGGAGAACACCTEST: gi|30134848|gb|CB920186.1|CB920186
genomic: TGGCTTCCATCCTGGAAGTTGATGATTGCAAGGGCCACACATTCATTCAGgtatactttc ... tttgttgcagTTTGAGCCAGCACCAAGGAGGGGAGAGCCTGATGTAACTCGGAGAACACCT
EST: TGGCTTCCATCCTGGAAGTTGATGATTGCAAGGGCCACACATTCATTCAG TTTGAGCCAGCA
genomic: TGGCTTCCATCCTGGAAGTTGATGATTGCAAGGGCCACACATTCATTCAGgtatactttc ... tttgttgcagTTTGAGCCAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGTTACTATATTTAGTGCACCAAATTATTGTTATCGCTGTGGGAACATGGCTTCCATCCTGGAAGTTGATGATTGCAAGGGCCACACATTCATTCAGgtatactttcctgatctctttctctctcatacattcaaccacacatgcacgtgacgtacacgccatccactttttcacaatggtgttggaaaggagtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggaaa