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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTCACATACGCAAGGAATATGACGAGTCCAGTGCCAAGTTGTCTAAGATGCAGTCTAGAATATCAAGTTTGACACAAAAGCTAAAGCATGATTTTGgtaagtatatattaaattttttttacctgtatttattatttcttggcatttgctttcatgttagggagttattagcttagcttccacacactaaactgaaatttaatcttacag

Basic information

species Vitis vinifera
transcript Vv06s0004g00140.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g00140.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA07G35090.1 (Glycine max), 5'ss of exon 11
GCTGCTCACATACGCAAGGAATATGACGAGTCCAGTGCCAAGTTGTCTAAGATGCAGTCTAGAATATCAAGTTTGACACAAAAGCTAAAGCATGATTTTGgtaagtatatattaaattttttttacctgtatttattatttcttggcatttgctttcatgttagggagttattagcttagcttccacacactaaactgaaatttaa-tcttacag
|||||||   | |||||||||||||| || || ||||||||||||||||| || |||||||||||||||||| |||  ||||||||||| |||||||||||| |||||      | |    |||    |||   |||||      ||||  | | | |   ||   ||||||    ||  |||  | | ||| || |  || |||| | ||||||
GCTGCTCGTGTTCGCAAGGAATATGATGAATCAAGTGCCAAGTTGTCTAAAATACAGTCTAGAATATCAAGTCTGAAGCAAAAGCTAAAACATGATTTTGgttagtatgctgctagtaacattt----gtaaccattat-----agcatgagttgtaaaaata---agttatggaattgacttgaataaactgaagtagaacttaaatattacag

upper sequence: Vv06s0004g00140.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G02950.2 (Glycine max), 5'ss of exon 8
GCTGCTCACATACGCAAGGAATATGACGAGTCCAGTGCCAAGTTGTCTAAGATGCAGTCTAGAATATCAAGTTTGACACAAAAGCTAAAGCATGATTTTGgtaagtatatattaaattttttttacctgtatttattatt-tcttggcatttgctttcatgttagggagttattagcttagcttccacacactaaactgaaatttaa-tcttacag
|||||||   |||||||||||||||| || || |||||||||||||| || || |||||||||||||||||| |||  ||||||||||| |||||||||||| |||||            |  ||     |||| | |   |  | ||||  | |    |   |   |||| |    ||   ||  | | ||| || |  || |||| | ||||||
GCTGCTCGTGTACGCAAGGAATATGATGAATCAAGTGCCAAGTTGTCGAAAATACAGTCTAGAATATCAAGTCTGAAGCAAAAGCTAAAACATGATTTTGgttagtatgc----------tgctagtaacatttgtcaccattatagcatgagtt---gtagaaatcagttttggaattgatttgaataaactgaagtagaacttaaatattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294964262|gb|GW838065.1|GW838065
EST:     GATGCAGTCTAGAATATCGAGTTTGACACAAAAGCTAAAGCATGATTTTG                         GGCCTGAGAAGGAATTCTATTCATTTTATGATCAATGTTTTGAGAGCAAGG
genomic: GATGCAGTCTAGAATATCAAGTTTGACACAAAAGCTAAAGCATGATTTTGgtaagtatat ... aatcttacagGGCCTGAGAAGGAATTCTATTCATTCTATGATCAATGTTTTGAGAGCAAGG
EST: gi|29783023|gb|CB348862.2|CB348862
EST:     AGTTTGACACAAAAGCTAGATGCATGATTTTG                         GGCCTGAGAAGGAATTCTATTCATTTTATGATCAATGTTTTGAGAGCAAGG
genomic: AGTTTGACACAAAAGCTA-AAGCATGATTTTGgtaagtatat ... aatcttacagGGCCTGAGAAGGAATTCTATTCATTCTATGATCAATGTTTTGAGAGCAAGG
EST: gi|29782985|gb|CB348782.2|CB348782
EST:     AAAAGCTAAAGCATGATTTTT                         CGCCTGAGAAGGAATTCTATTCATTTTATGATCAATGTTTTGAGAGCAAGG
genomic: AAAAGCTAAAGCATGATTTTGgtaagtatat ... aatcttacagGGCCTGAGAAGGAATTCTATTCATTCTATGATCAATGTTTTGAGAGCAAGG
EST: gi|33406825|gb|CF212452.1|CF212452
EST:     GATGCAGTCTAGAATATCGAGTTTAACACAAAAGCTAAAGCATGATTTTG                         GGCCTGAGAAGGAATTCTATTCATTCTATGATCAATGTTTTGAGAGCAAGG
genomic: GATGCAGTCTAGAATATCAAGTTTGACACAAAAGCTAAAGCATGATTTTGgtaagtatat ... aatcttacagGGCCTGAGAAGGAATTCTATTCATTCTATGATCAATGTTTTGAGAGCAAGG
EST: gi|29786143|gb|CB343671.2|CB343671
EST:     AGTTTGACACAAAAGCTAAAGCATGATTTTG                         GGCCTGAGAAGNAATNCTATTCATTTTATGATCAATGTTTTGAGAGCAAGG
genomic: AGTTTGACACAAAAGCTAAAGCATGATTTTGgtaagtatat ... aatcttacagGGCCTGAGAAGGAATTCTATTCATTCTATGATCAATGTTTTGAGAGCAAGG