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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTTCATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGGgtatgaagttcatcagtacggatataaatggttttttgcaatattgttgctaatgcagtatttcaagctctttgttagagggtgcatttagttgaaatttggaatggaaagatgatgcacatgtcaatgcaacattgtttgtcag

Basic information

species Vitis vinifera
transcript Vv05s0077g02310.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g02310.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: PP1S402_49V6.1 (Physcomitrella patens), 5'ss of exon 9
TATTCGGTCTTATCATGGTCATCTGAGTGGGGTTTATTGTTTGGCACTTCATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGGgtatgaagttcatcagtacggatataaatggttttttgcaatattgttgctaatgcagtatttcaagctctttgttagagggtgcatttagttgaaatttggaatggaaag-atgatgcacatgtcaatgcaacattgtttgtcag
||||||||| |||||||||||| ||||||| |||||||| || || |||||||| ||| |||| ||| |  | |||||||| || ||||| || ||||| ||| ||  |||        || | |   |  ||   | ||  || |||  |  | || |   |||| || ||||||      |   |   |||  |||  |   |    || |     | |   ||  ||||              
TATTCGGTCATATCATGGTCATTTGAGTGGAGTTTATTGCTTAGCTCTTCATCCTACACTTGATATTCTCATGACTGGGGGTCGAGATTCAGTGTGCCGAgtaagacattc--------ggttcttctttcttcacttcag-atggttcatt-ttcaattgatcaaactatttgtt------tttttcgcgttacaatcagacgtttttagcacctaacgctcttctctgcag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110416775|gb|EC982779.1|EC982779
EST:     ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGG                         GTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
genomic: ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGGgtatgaagtt ... tgtttgtcagGTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
EST: gi|77578499|gb|DV218043.1|DV218043
EST:     ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGG                         GTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
genomic: ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGGgtatgaagtt ... tgtttgtcagGTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
EST: gi|254917683|gb|GR903335.1|GR903335
EST:     GTGATTCTGTCTGCCGG                         GTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
genomic: GTGATTCTGTCTGCCGGgtatgaagtt ... tgtttgtcagGTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
EST: gi|349818063|gb|FQ408838.1|FQ408838
EST:     ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGG                         GTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
genomic: ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGGgtatgaagtt ... tgtttgtcagGTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
EST: gi|351038798|gb|FQ464664.1|FQ464664
EST:     CTTACTGGGGGACGTGATTCTGTCTGCCGG                         GTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
genomic: CTTACTGGGGGACGTGATTCTGTCTGCCGGgtatgaagtt ... tgtttgtcagGTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
EST: gi|110724126|gb|EE099691.1|EE099691
EST:     ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGG                         GTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
genomic: ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGGgtatgaagtt ... tgtttgtcagGTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
EST: gi|161707291|gb|FC057696.1|FC057696
EST:     ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGG                         GTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT
genomic: ATCCCACAATTGACATTTTGCTTACTGGGGGACGTGATTCTGTCTGCCGGgtatgaagtt ... tgtttgtcagGTCTGGGATATCCGCAGCAAGATGCAAATTCATGCACTGTCTGGACATGAT