Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAGTCTTTTCATGgtaacacaattgacgtgatttcatttataagcaatttcacttccagagattcagcttgcctgaattcaattttgcag

Basic information

species Vitis vinifera
transcript Vv05s0049g01620.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0049g01620.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G34340.1 (Glycine max), 5'ss of exon 15
ATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAGTCTTTTCATGgtaacacaattgacgtgatttcatttataagcaatttcact----tccagagattcagcttgcc-tgaattcaattttgcag
 |    |||||||| |||||||||||||||||||||||||||||||| || |||||  ||||||||||||| ||||| ||    | |||| |  ||||||      | |  ||| |   |   | ||   | ||  |      |     ||||   | || ||   |   |  |||||
GTGATGACACAGGCAGATTTAGGCCTTGCAGATGCATATATCAATGGGGACTTTTCATTTGTTGATAAAGATGAAGGTCTCTTGAATCTTATTTTGgtaagcattctcatctgaatctttcagtgagttgtctctttgggactctacacttcaatataccatggtatttttactgcag

upper sequence: Vv05s0049g01620.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G33310.1 (Glycine max), 5'ss of exon 14
ATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAGTCTTTTCATGgtaa-cacaattgacgtgatttcatttataagcaatttcacttccagagattcagcttgcctgaattcaattttgcag
 |    |||||||| |||||||||||||| |||||||||||||| || || |||||  ||||||||||||| ||||| ||    | |||| |  |||||| ||       |   || | |                                                      
GTGATGACACAGGCAGATTTAGGCCTTGCGGATGCATATATCAACGGGGACTTTTCATTTgttgataaagatgaaggtctcttgattcttattttggtaagcattcccatcagaatcttacag---------------------------------------------------

upper sequence: Vv05s0049g01620.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G23530.1 (Arabidopsis thaliana), 5'ss of exon 12
ATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAGTCTTTTCATGgtaacacaattgacgtgatttcatttataagcaatttcacttccagagattc--agcttgcctga---attcaatttt--gcag
 ||   ||||| || |||||||| ||||||||||| ||||||||||||||||||||| | |||||||||||   ||| |||  || |||  | |||||| || |||  |      |  |   |||   | ||    ||   |   ||   || |||  | |   ||  || |||  ||||
GTTATGACACAAGCGGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTCGTTGATAAAGAATCAGGACTTTTAAATCTGATTATGgta-cataatatatacatgtagaagcatagatacttgagtttttcgtcttttcgagtttgtttaattaatgaaactttctgcag

upper sequence: Vv05s0049g01620.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G23510.1 (Arabidopsis thaliana), 5'ss of exon 12
ATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAGTCTTTTCATGgta-acacaattgacgtg-------------atttcatttataagcaatttc-----acttccagagattca--gcttgcctga--attcaattttgcag
 ||   ||||| || |||||||| ||||||||||| ||||||||||||||||||||| | |||||||||||   ||| |||  || |||  | |||||| | |  ||  || ||             | || | || |  |   ||||     | ||| | || |||   ||||   | |  | ||  || |||||
GTTATGACACAAGCGGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTCGTTGATAAAGAATCAGGACTTTTAAATCTGATTATGgtacataatatatacatgtagaagcatagatacttgagtttttcgtcttttcgagttatttctaaagtttctctgcttaattaataagtcttttatgcag

upper sequence: Vv05s0049g01620.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G23480.2 (Arabidopsis thaliana), 5'ss of exon 4
ATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAGTCTTTTCATGgtaacacaattgacgtgatttcatttataagcaatttcacttccagagattcagcttgcctgaattcaattttgcag----
 ||   ||||  || |||||||| ||||||||||| ||||||||||||||||||||| | || |||||||||  ||| |||   | |||  | |||||| || |||  |      |  |   ||| | | || |   | |     |||   ||   |  | |   ||||        
GTTATGACACTAGCAGATTTAGGACTTGCAGATGCTTATATCAATGGAGATTTTTCTTTCGTCGATAAAGACTCAGGACTTTTGAATCTGATTATGgta-cataatatatacttgtagaagcataggtacttacttcttcgattgttcgagttatttctaatggtttttatctacag

upper sequence: Vv05s0049g01620.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G23460.1 (Arabidopsis thaliana), 5'ss of exon 3
ATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAGTCTTTTCATGgtaacacaattgacgtgatttcatttataagcaatttcacttccagagattcagct--tgcctga--attcaattttgcag
 ||   ||||||| ||||||||| ||||| ||||| ||||||||||||||||||||  ||||  |||| ||   ||| |||   | |||  ||||||||     |   ||     || |   ||  | |  |    ||  | |  ||           |||  ||  ||  ||||||
GTTATGACACAGGTTGATTTAGGACTTGCTGATGCTTATATCAATGGAGATTTTTCATTTGTCAATAAGGAAACAGGACTTTTGAATCTGATCATGgtattgttacatacacatattaaagcatgtggatctatgtttaaaaacttttgatcgacatttgatcatgaaaacttgcag

upper sequence: Vv05s0049g01620.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G23470.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTGCTACACAGGCTGATTTAGGCCTTGCAGATGCATATATCAATGGAGATTTTTCTCTTGTTGATAAAGACGAAGGGCTTCAAAGTCTTTTCATGgta-acacaattgacgtgattt---catttataagcaatttcacttccagagattcagcttgcctg-aattcaattttgcag
 ||   ||||| || |||||||| || |||||||| ||||||| ||||||||||||| | || |||||||||  ||| |||   | | |  | |||||| |    |   ||   | ||   ||| |||    | || |   | |     |||   ||   |  |||   | |||||||
GTTATGACACAAGCAGATTTAGGACTCGCAGATGCTTATATCAGTGGAGATTTTTCTTTCGTCGATAAAGACTCAGGACTTTTGAATTTGATTATGgtacatgttacatactctacttgtgcatatatggatacttacttcttcgattgttcgagttatttctaatgttaatttgcag