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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGATATTTGGTCATATGGGTGTCTCCTCTTGGAACTATTGACTTTGCAAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGgtatgctctctcttcttctctcccttccccttctccctctctctcttccatctctcctctccatcttttcctttctcatttaaagacaactagttcaggg...

Basic information

species Vitis vinifera
transcript Vv05s0020g04180.t01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30136000|gb|CB921338.1|CB921338
EST:     AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAG                         ATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
genomic: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGgtatgctctc ... ttttaagcagATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
EST: gi|110358405|gb|EC922592.1|EC922592
EST:     AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAG                         ATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
genomic: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGgtatgctctc ... ttttaagcagATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
EST: gi|110419083|gb|EC985277.1|EC985277
EST:     AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAG                         ATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCGTTGGGTTCACAG
genomic: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGgtatgctctc ... ttttaagcagATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
EST: gi|110363558|gb|EC927155.1|EC927155
EST:     AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAG                         ATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
genomic: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGgtatgctctc ... ttttaagcagATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
EST: gi|110701353|gb|EE078829.1|EE078829
EST:     AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAG                         ATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
genomic: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGgtatgctctc ... ttttaagcagATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
EST: gi|161718798|gb|FC068610.1|FC068610
EST:     AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAG                         ATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
genomic: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGgtatgctctc ... ttttaagcagATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
EST: gi|18458191|gb|BM436469.1|BM436469
EST:     AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAG                         ATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
genomic: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGgtatgctctc ... ttttaagcagATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTGGATATTTGGTCATATGGGTGTCTCCTCTTGGAACTATTGACTTTGCAAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGgtatgctctctcttcttctctcccttccccttctccctctctctcttccatctctcctctccatcttttcctttctcatttaaagacaactagttcaggg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccatc
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