Sequence
atgc intronic sequence ATGC exonic sequenceTCCATGGTACAAAGAACGCCTCCTTCACCAGACCTCTCTTGGTTCTCTGATGGTCATAATTCTCATTAGGACTGTGAAATATAACCTATCTAAGCTGCGGgtatgacttgaagttttcatatttagattcatggtcaagtaattactgtcatctttcttgtgattgttaaaagcagactgtttctttgacttgagatcaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G38920.2 (Glycine max), 5'ss of exon 10
TCCATGGTACAAAGAACGCCTCCTTCACCAGACCTCTCTTGGTTCTCTGATGGTCATAATTCTCATTAGGACTGTGAAATATAACCTATCTAAGCTGCGGgtatga-cttgaagttttcata---tttagattcatggtcaagtaattactgtcatctttcttg-----tgattgttaaaagcagac--tgtttctttgacttgagatcaa----------------------------------------
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TCCATGGTACAAAGAACGCCTTCTCCATCAGACTTCTCTTGGTTCCCTCATGGTCGTAATTCTTATCAGAACTGTACAGTATAATTTGTCAAAACTACGGgtataaatcttaaactgagatggactattaatttaatctcatgtatctaaaattagcctttccgctgactgattatttaattcatacattacatatattgtatggaaaaaatacgtaatataaatttctgttatgtattgaattatgatag
upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G28880.1 (Glycine max), 5'ss of exon 9
TCCATGGTACAAAGAACGCCTCCTTCACCAGACCTCTCTTGGTTCTCTGATGGTCATAATTCTCATTAGGACTGTGAAATATAACCTATCTAAGCTGCGGgtatga--cttgaagtt---ttcatatttagattcat---ggtcaagtaattactgtcatctttcttg--tgattgttaaaagcagac--tgtttctttgacttgagatcaa----------------------------------------
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TCCTTGGTACAAAGAACGCCTGTTCCATCAGACTTCTCTTGGTTCGCTCATGGTCATAATTCTTAGCAGAACTGTACAGTATAATTTGTCAAAACTACGGgtataaatcttaaacttagatggactattaatttaatctcatttatctaaaaattagcttttctgctgactgattatttaattcagacattgcatatattgtatggaaaaaatacgtaaaatatatttctgttatgtattgaattatgatag
upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA15G24080.1 (Glycine max), 5'ss of exon 11
TCCATGGTACAAAGAACGCCTCCTTCACCAGACCTCTCTTGGTTCTCTGATGGTCATAATTCTCATTAGGACTGTGAAATATAACCTATCTAAGCTGCGGgtatgacttgaagttttcatatttagattcatggtcaagtaattactgtcatctttcttgtgattgt-taaaagcagactgtttctttgacttgagatcaa-----
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TCCATGGTACAAAGAACGTCTCCTCCTTCAGTCTTCTCTTGGTTCCCTCATGGTCATCATTCTTATCAGAACTATACAGTATAATTTGTCTAAACTTCGGgtatgaatcttaat----gcaagtgggatcat--taatttaactacatatatttaagctgccattttctgctgactgactatttagtaagtttcatatcattaata
upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G00550.1 (Glycine max), 5'ss of exon 10
TCCATGGTACAAAGAACGCCTCCTTCACCAGACCTCTCTTGGTTCTCTGATGGTCATAATTCTCATTAGGACTGTGAAATATAACCTATCTAAGCTGCGGgtatgacttgaagttttcatatttagattcatggtcaagtaattactgtcatctttcttgtgattgttaaaagcagactgtttctttgacttgagatcaa------
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TCCATGGTACAAAGAACGTCTCCTCTATCAGTCTTCTCTTGGTTCCCTCATGGTCATCATTCTTATCAGAACTATACAGTATAATTTGTCTAAACTTCGGgtatgaatcttaat----gcaagtgggatcatca--atttaactactccatatatttaagctgccattttctgttgactgactatttgataagaagtttcatatca
upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G04200.1 (Arabidopsis thaliana), 5'ss of exon 10
TCCATGGTACAAAGAACGCCTCCTTCACCAGACCTCTCTTGGTTCTCTGATGGTCATAATTCTCATTAGGACTGTGAAATATAACCTATCTAAGCTGCGGgtatgacttgaagttttcatatttagattcatggt--------caagtaa-------ttactgtcatctttcttgtgattgttaaaagcagact-gtttctttgacttgagatcaa------------------------------------------------------------
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GCCATGGTACAAGGAGCATCTCCTTCATCAGACGTCTCTTGGTTCCTTAATGGTCATTATTCTCATAAGAACAGTGCAGCATAACCTTTCTAAACTTCGGgtatggctttagattcatatcttagcaatgaaaatgtttttttcagacaaattcgttttagtttggcagtttgggtaggtgctaggtgcagctttataagagtgatgtcacgttaaaatcttagccagatatcaaaataacttttgtgacaaattctgtttcttgggctgttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714238|gb|FC064147.1|FC064147EST: TGGTCATAATTCTCATTAGGACTGTGAAATATAACCTATCTAAGCTGCGG GATGTTTATCTTCATACAAACTGTCTCGCAACTTTGGCGAACATGGCTCCT
genomic: TGGTCATAATTCTCATTAGGACTGTGAAATATAACCTATCTAAGCTGCGGgtatgacttg ... attgtgacagGATGTTTATCTTCATACAAACTGTCTCGCAACTTTGGCGAACATGGCTCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCATGGTACAAAGAACGCCTCCTTCACCAGACCTCTCTTGGTTCTCTGATGGTCATAATTCTCATTAGGACTGTGAAATATAACCTATCTAAGCTGCGGgtatgacttgaagttttcatatttagattcatggtcaagtaattactgtcatctttcttgtgattgttaaaagcagactgtttctttgacttgagatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagca