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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCGCAGTCGTCCCCAACCTTTTTGCCCCCCAAAGCCTGATGATGTTGCAACCATTTGCTATACAAGTGGTACAACTGGGACACCTAAGgtatactttagttcctgtgaacttcagttttctgatcatgaagctcaagtattccccaagaatgacatgactgtctatgtaattaaataaagttatttatttatttatattttttggtgactatggtaag

Basic information

species Vitis vinifera
transcript Vv05s0020g03080.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G39540.1 (Glycine max), 5'ss of exon 10
GGTCGCAGTCGTCCCCAACCTTTTTGCCCCCCAAAGCCTGATGATGTTGCAACCATTTGCTATACAAGTGGTACAACTGGGACACCTAAGgtatactttagttcctgtgaactt-cagttttctgatcat-gaagctcaagtattccccaagaatgacatgact---gtctat-gtaattaaataaag--ttatttatttatttatattttttggtgactatggtaag
|| |||||    |  || |  || || || ||||| ||||||||  |||||||||||||||||||||||||||||||||| || || || || |   |  | ||||||  ||||   |||| ||  || | |  | |  | | |||||| | ||||   |   |   |  ||| |||  || ||||||  ||  || || || | | |  |      | | || | ||
GGACGCAGCAACCTTCAGCTCTTCTGTCCACCAAAACCTGATGACATTGCAACCATTTGCTATACAAGTGGTACAACTGGAACCCCAAAAgtgtg--taggatcctgtagacttatggtttacttttccttggtgatatatttttcccctaaaatgtttttttttttgcttatagtagctacataaagcatttctttttcatgtttctactcaacaaattctgctcag

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G28200.1 (Glycine max), 5'ss of exon 10
GGTCGCAGTCGTCCCCAACCTTTTTGCCCCCCAAAGCCTGATGATGTTGCAACCATTTGCTATACAAGTGGTACAACTGGGACACCTAAGgtatactttagttcctgt-gaacttcagttttctgat-catgaagctcaagtattccccaagaatgacatgactgtctat-gtaattaaataaag--ttatttatttatttatattttttggtgactatggtaag
|| || ||    |  || || ||||| || ||||| ||||||||  |||||||||||||||| ||||||||||||||||| || || || |||    |  ||||| || ||| |   |||| ||  | | ||  | |  | |   |||| | ||||   |   ||  ||| |||  || | ||||  ||  || || || | | |  |      | | |||  ||
GGACGTAGCAACCTTCAGCCCTTTTGTCCACCAAAACCTGATGACATTGCAACCATTTGCTACACAAGTGGTACAACTGGAACCCCAAAAgtacg--taggttcccgtagaattatggtttactttttcttggtgatatatttcccccctaaaatgttgtctttgcttatagtagctacacaaagcatttctttttcatctttctactaaacaaattctggccag

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 10
GGTCGCAGTCGTCCCCAACCTTTTTGCCCCCCAAAGCCTGATGATGTTGCAACCATTTGCTATACAAGTGGTACAACTGGGACACCTAAGgtatactttagttcc--tgtgaacttcagtt-------ttctgatcatgaagctcaagtattccccaagaatgacatg------actgtctatgtaattaaata----aagttatttatttatttatatttttt---ggtgac-tatggtaag-
||||| |||   || || |  ||||  || ||||| || ||||||||||||||||| ||||||||||| || |||||||||||||| ||||| |   ||| ||    ||| | ||||| ||       | ||| || | |   |||  | | |||  |  ||  |||       ||||| ||| | ||    ||       ||  |   ||   |    || ||   | |||  |||| |||  
GGTCGTAGTAACCCTCAGCGATTTTTTCCACCAAAACCCGATGATGTTGCAACCATATGCTATACAAGCGGAACAACTGGGACACCCAAGgttttacttacttgaaatgttatcttcatttagggtagtactgttctttat-ttcatatttaccctgactatagcatctaacttactgtttattttatcctgtatccctcattcctcccttgcctgctcttcttctggatgaaatatgttaaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37185045|gb|CF604398.1|CF604398
EST:     ATGATGTTGCAACCATTTGCTATACAAGTGGTACAACTGGGACACCTAAG                         GGAGCTGTACTGTCCCATGGAAACTTGATTGCTAATGTTGCTGGGGCCACT
genomic: ATGATGTTGCAACCATTTGCTATACAAGTGGTACAACTGGGACACCTAAGgtatacttta ... ctatggtaagGGAGCTGTACTGTCCCATGGAAACTTGATTGCTAATGTTGCTGGGGCCACT