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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGTGGCAGCTCTCTATGATGATAAAATTCTTTTTATTTTCGGAGGAGGATCAAAATCTAGGACTCTGAATGACTTGTACTCTCTTGACTTTGAAACGgtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttctataatgatgaaaacttacatcttcattagttgattttgatatgtggatttttgtctcag

Basic information

species Vitis vinifera
transcript Vv05s0020g01740.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA15G10310.1 (Glycine max), 5'ss of exon 10
TCATGTGGCAGCTCTCTATGATGATAAAATTCTTTTTATTTTCGGAGGAGGATCAAAATCTAGGACTCTGAATGACTTGTACTCTCTTGACTTTGAAACGgtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttctataatgatgaaaacttacatcttcattagttg---attttgatatgtggattt-ttgtctcag
 |||||||||||||| ||||||| ||||||||||||||| || ||||||| |||||||||||||||  ||||||||||||| || |||||||||||||| ||     ||||   |||     || |  ||             |||||||||  || |||||| | ||| ||  |||||  |||   | ||| ||    | || | || | ||||
CCATGTGGCAGCTCTTTATGATGGTAAAATTCTTTTTATATTTGGAGGAGCATCAAAATCTAGGACCTTGAATGACTTGTATTCACTTGACTTTGAAACAgt-----gagctctcatatcagtgaaactt------------ttttatttctccaa-gatgaaga-ttaaatgctcattcattgtgtaatttaatgaaagtatatgttctttcag

upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G28760.1 (Glycine max), 5'ss of exon 8
TCATGTGGCAGCTCTCTATGATGATAAAATTCTTTTTATTTTCGGAGGAGGATCAAAATCTAGGACTCTGAATGACTTGTACTCTCTTGACTTTGAAACGgtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttctataatgatgaaaacttacatcttcattagttg---attttgatatgtggat-ttttgtctcag
 |||||||||||||| ||||||| ||||||||| ||||| || ||||||| ||||||||| |||||  ||||||||||||| || |||||||||||||| ||     ||||         |||  |  | | ||  ||||   |||||||||  ||  ||||| | ||| ||  |||||  |||   | ||| ||    | || |||| | ||||
CCATGTGGCAGCTCTTTATGATGGTAAAATTCTATTTATATTTGGAGGAGCATCAAAATCCAGGACCTTGAATGACTTGTATTCACTTGACTTTGAAACAgt-----gagc---------tctctatatcagtg--aaacttttttatttctccaa-aatgaaga-ttaaatgctcattcattgtgtaatttaatgaaagtatattttctttcag

upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA07G38020.1 (Glycine max), 5'ss of exon 9
TCATGTGGCAGCTCTCTATGATGATAAAATTCTTTTTATTTTCGGAGGAGGATCAAAATCTAGGACTCTGAATGACTTGTACTCTCTTGACTTTGAAACGgt---------ttgtagagcaa--------------ccattcttctggagtttattgtcaaacaactttatttct--ataatgatgaaaacttacatcttcattagttgattt-tgatatgtggatttttgtctcag
 ||||| || ||||| ||||||||||||||||||| ||| || ||||||  ||||||||| |||||  | ||||| || || || |||||||||||||| ||          |||||  | |              | || || |   |   |   ||  |||  ||| ||||||  | | ||   |  | ||     |  |  | || ||||   | |  |  || ||| | ||||
CCATGTAGCTGCTCTTTATGATGATAAAATTCTTTATATATTTGGAGGATCATCAAAATCCAGGACCTTAAATGATTTATATTCACTTGACTTTGAAACTgtgagggagctctgtaggtccaaatgtgtcaatggtctatactgcaataacatgcagtataactgcttgatttctctacagtgcaaatgaatttttcgtagaccatttaatttgctaaaaatttatatttct-tcag

upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA17G02680.1 (Glycine max), 5'ss of exon 8
TCATGTGGCAGCTCTCTATGATGATAAAATTCTTTTTATTTTCGGAGGAGGATCAAAATCTAGGACTCTGAATGACTTGTACTCTCTTGACTTTGAAACGgt---------ttgtagagc----------aaccattcttctggagtt----tattgtcaaacaactttatttct--ataatg---atgaaaacttacatcttcatt--agttgattttgatatgtggatttttgtctcag
 ||||| || ||||| ||||||||||||||||||| ||| || ||||||  ||||||||| |||||  | ||||| || || || |||||||||||||| ||          |||||  |          ||   |   |   ||  |    |   ||  |||  ||| ||||||  | | ||   |||||  |||       ||||  | |||||    |||| |  || ||| | ||||
CCATGTAGCTGCTCTTTATGATGATAAAATTCTTTATATATTTGGAGGATCATCAAAATCCAGGACCTTAAATGATTTATATTCACTTGACTTTGAAACTgtgagtgagctctgtaggtccaaatgtgtcaatggtctatacagaaataacatgcagtataactgcttgatttctccacagtgcaaatgaattcttcataaaccatttaatttgataaaaatatatatatatttct-tcag