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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGGGGATACTTTGCCTTCATGGCTGTTGAAAGCTTACCTGGTAACCAGTTCTGGGAGCGGATTTTATTACTCTTTACGGCACCAAGTAGAAGATACAAgtacactcttaaacccttttccttatcttttcccatgctctttgtatctttctcctttaacttgtaagaaaactaactgaattgcatttgttcatctgcttttattattatttcctttttcag

Basic information

species Vitis vinifera
transcript Vv05s0020g00440.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00440.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G03600.1 (Glycine max), 5'ss of exon 13
TCTGGGGATACTTTGCCTTCATGGCTGTTGAAAGCTTACCTGGTAACCAGTTCTGGGAGCGGATTTTATTACTCTTTACGGCACCAAGTAGAAGATACAAgtacactcttaaacccttttccttatcttttcccatgctctttgtatctttctcctttaacttgtaagaaaactaactgaattgcatttgttcatctgcttttattattatttcctttttcag-----
|||||||||| ||||| ||||||||  |||||| ||||||||| |||||||| ||||| |||||||||||| | || || || ||||| ||||||||||||||      | |       || | | | |||||  |||  ||| | ||  ||| |   ||     |     | |||||||  |||   || |  | |  |||| || || |||    |  |       
TCTGGGGATATTTTGCTTTCATGGCCATTGAAAACTTACCTGGCAACCAGTTTTGGGAACGGATTTTATTAATTTTCACTGCTCCAAGCAGAAGATACAAgtatgaatatga-------tcttaaacatttcc--tgccttttttttcactcttcagaaa-----agttgcattaactgacatgctgctgctgcttttttttttttttttttttaaataactataaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110362963|gb|EC926527.1|EC926527
EST:     TTCTGGGAGCGGATTTTATTACTCTTTACGGCACCAAGTAGAAGATACAA                         AGTTTTGGAGGACTACCATGCAACTTTTGTGGAAACCGTTCCTTTCAAGAC
genomic: TTCTGGGAGCGGATTTTATTACTCTTTACGGCACCAAGTAGAAGATACAAgtacactctt ... cctttttcagAGTTTTGGAGGACTACCATGCAACTTTTGTGGAAACCGTTCCTTTCAAGAC
EST: gi|22014079|gb|BQ799113.1|BQ799113
EST:     TAGAAGATACAA                         AGTTTTGGAGGACTACCATGCAACTTTTGTGGAAACCGTTCCTTTCAAGAC
genomic: TAGAAGATACAAgtacactctt ... cctttttcagAGTTTTGGAGGACTACCATGCAACTTTTGTGGAAACCGTTCCTTTCAAGAC